Construct: ORF ccsbBroadEn_12482
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010945.1_s300c1, BRDN0000394185
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FAM160B2 (64760)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 64760 | FAM160B2 | family with sequence simila... | NM_001354251.2 | 50.3% | 50.2% | 1_1020del;1876C>T |
| 2 | human | 64760 | FAM160B2 | family with sequence simila... | XM_017013734.1 | 50.3% | 50.2% | 1_1020del;1876C>T |
| 3 | human | 64760 | FAM160B2 | family with sequence simila... | NM_001354250.2 | 46.4% | 46.3% | 1_1191del;2047C>T |
| 4 | human | 64760 | FAM160B2 | family with sequence simila... | NM_022749.7 | 46.3% | 46.2% | 1_1194del;2050C>T |
| 5 | human | 64760 | FAM160B2 | family with sequence simila... | XM_006716381.3 | 45.7% | 45.6% | 1_1194del;1849_1878del;2080C>T |
| 6 | human | 64760 | FAM160B2 | family with sequence simila... | XR_428314.3 | 35.7% | (many diffs) | |
| 7 | human | 64760 | FAM160B2 | family with sequence simila... | NR_148727.1 | 35.4% | 1_1294del;2150C>T;2330_2915del | |
| 8 | human | 64760 | FAM160B2 | family with sequence simila... | NR_148731.2 | 34.1% | 1_1295del;2151C>T;2331_3024del | |
| 9 | human | 64760 | FAM160B2 | family with sequence simila... | NR_148730.2 | 34.1% | 1_1298del;2154C>T;2334_3027del | |
| 10 | human | 64760 | FAM160B2 | family with sequence simila... | NR_148729.2 | 30.9% | (many diffs) | |
| 11 | human | 64760 | FAM160B2 | family with sequence simila... | NR_148728.2 | 30.7% | 1_1636del;2492C>T;2672_3365del | |
| 12 | human | 64760 | FAM160B2 | family with sequence simila... | XM_005273602.4 | 30.6% | 29.7% | (many diffs) |
| 13 | mouse | 239170 | Fam160b2 | family with sequence simila... | XM_017316016.1 | 63.7% | 65.7% | (many diffs) |
| 14 | mouse | 239170 | Fam160b2 | family with sequence simila... | XM_017316017.1 | 63.7% | 65.7% | (many diffs) |
| 15 | mouse | 239170 | Fam160b2 | family with sequence simila... | XM_006518998.2 | 44.1% | 45.5% | (many diffs) |
| 16 | mouse | 239170 | Fam160b2 | family with sequence simila... | NM_194345.1 | 38.8% | 40% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1101
- ORF length:
- 1035
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCT GCGCCAGCTT CGCTCCCCTG CGCTGCTGCG GGAGGCCGTG GCTTTCCTCC 121 TGGGCACAGA CCGGCAGCCT GAAGCCCCCG GGGACAACCC CCACACCCTG TATGCTCATC 181 TCATCGGGCA TTGTGACCAC CTCTCTGATG AGATCAGCAT CACCACACTC CGGCTGTTTG 241 AGGAGCTGCT GCAGAAGCCC CACGAGGGGA TCATCCACAG CCTGGTCCTG CGCAACCTTG 301 AGGGCCGCCC TTACGTGGCC TGGGGCTCAC CAGAGCCTGA GAGCTATGAG GACACCCTAG 361 ACCTGGAGGA AGACCCCTAC TTCACCGACA GCTTCCTGGA TTCCGGCTTT CAAACTCCCG 421 CAAAGCCTCG CCTAGCTCCT GCTACCAGTT ACGATGGCAA AACAGCAGTG ACCGAGATCG 481 TCAACAGTTT CCTGTGCCTG GTCCCCGAGG AAGCCAAGAC CTCTGCCTTC CTGGAGGAGA 541 CAGGCTATGA CACATACGTC CACGATGCTT ATGGCCTGTT CCAGGAGTGC AGCTCCCGCG 601 TCGCCTCCTG GGGCTGGCCT CTGACCCCCA CACCTTTGGA CCCCCATGAG CCCGAGCGAC 661 CTTTCTTCGA GGGCCACTTC CTCCGAGTGC TGTTTGACCG CATGTCCCGG ATTCTGGATC 721 AGCCATACAG CCTGAACCTG CAGGTGACCT CGGTCCTGTC CCGGCTTGCC CTCTTCCCCC 781 ACCCCCATAT TCATGAGTAC CTGCTGGATC CGTACATCAG CCTGGCCCCC GGCTGCAGGA 841 GCCTATTCTC CGTGTTGGTG AGGGTGATCG GGGACTTGAT GCAGAGAATC CAGAGGGTAC 901 CCCAGTTCCC AGGCAAGCTG TTCCTGGTGC GCAAGCAGTT GACGGGCCAG GCTCCTGGGG 961 AGCAGCTGGA CCACCAGACC CTCCTCCAGG GCGTGGTGGT GCTGGAGGAG TTCTGCAAGG 1021 AGCTGGCTGC CATTGCCTTC GTCAAGTTTC CCCCACATGA TCCTCGCCAG AACGTCTCCC 1081 CAGCCCCGGA AGGGCAGGTC TGCCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc 1141 attgcttatc aatttgttgc aacgaac