Construct: ORF ccsbBroadEn_12485
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006253.1_s300c1, BRDN0000397352
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CREB3L2 (64764)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 64764 | CREB3L2 | cAMP responsive element bin... | NM_001253775.2 | 99.5% | 99.5% | 295_297delACC |
| 2 | human | 64764 | CREB3L2 | cAMP responsive element bin... | NM_194071.4 | 44% | 37.6% | (many diffs) |
| 3 | human | 64764 | CREB3L2 | cAMP responsive element bin... | NM_001318246.1 | 32% | 25.8% | (many diffs) |
| 4 | human | 64764 | CREB3L2 | cAMP responsive element bin... | XM_005250541.4 | 32% | 25.8% | (many diffs) |
| 5 | human | 64764 | CREB3L2 | cAMP responsive element bin... | XM_017012540.1 | 32% | 25.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 807
- ORF length:
- 741
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA GGTGCTGGAG AGCGGGGAGC AGGGCGTGCT GCAGTGGGAC CGCAAGCTGA 121 GCGAGCTGTC AGAGCCCGGG GACGGCGAGG CCCTCATGTA CCACACGCAC TTCTCAGAAC 181 TTCTGGATGA GTTTTCCCAG AACGTCTTGG GTCAGCTCCT GAATGATCCT TTCCTCTCAG 241 AGAAGAGTGT GTCAATGGAG GTGGAACCTT CCCCGACGTC CCCGGCGCCT CTCATCCAGG 301 CTGAGCACAG CTACTCCCTG TGCGAGGAGC CTCGGGCCCA GTCGCCCTTC ACCCACATTA 361 CCAGTGACAG CTTCAATGAC GATGAGGTGG AAAGTGAGAA ATGGTACCTG TCTACAGACT 421 TCCCTTCAAC ATCCATCAAG ACAGAGCCAG TTACAGACGA ACCACCCCCA GGACTCGTTC 481 CGTCTGTCAC TCTGACCATC ACAGCCATCT CCACCCCGTT GGAAAAGGAG GAACCTCCTC 541 TGGAAATGAA CACTGGGGTT GATTCCTCGT GCCAGACCAT TATTCCTAAA ATTAAGCTGG 601 AGCCTCATGA AGTGGATCAG TTTCTAAACT TCTCTCCTAA AGAAGGTCTG TCTGCCCTCC 661 CTGTGTCCCT TTGGGTTATG GATATGGTCT CTGGGTCTAC AGAGAGGGAA TATGGCGAGA 721 GAGCTGGGAT GAGTTTGTAC CACAGATGTT GTAGCTGGCT TTATGAAATA GCTCTGTTCT 781 TAAAAAATAA AAATTTTGCT TCCAAATACC CAACTTTCTT GTACAAAGTt ggcattataa 841 gaaagcattg cttatcaatt tgttgcaacg aac