Construct: ORF ccsbBroadEn_12573
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007919.1_s300c1, BRDN0000392040
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CCNJL (79616)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79616 | CCNJL | cyclin J like | XM_017009848.1 | 38.1% | 38.1% | 1_588del |
| 2 | human | 79616 | CCNJL | cyclin J like | XM_011534647.3 | 36.7% | 36.7% | 1_624del |
| 3 | human | 79616 | CCNJL | cyclin J like | XM_011534646.3 | 33.1% | 33.1% | 1_732del |
| 4 | human | 79616 | CCNJL | cyclin J like | NM_001308173.2 | 31.2% | 31.2% | 1_798del |
| 5 | human | 79616 | CCNJL | cyclin J like | XM_017009847.1 | 31.1% | 31.1% | 1_801del |
| 6 | human | 79616 | CCNJL | cyclin J like | XM_006714917.4 | 28% | 28% | 1_933del |
| 7 | human | 79616 | CCNJL | cyclin J like | NM_024565.7 | 27.8% | 27.8% | 1_942del |
| 8 | human | 79616 | CCNJL | cyclin J like | XM_017009846.2 | 22.5% | 22.5% | 1_1248del |
| 9 | human | 79616 | CCNJL | cyclin J like | XR_427811.3 | 10.7% | 1_1286del;1650_3378del | |
| 10 | human | 79616 | CCNJL | cyclin J like | XR_427810.4 | 10% | 1_1527del;1891_3619del | |
| 11 | human | 79616 | CCNJL | cyclin J like | NR_131769.2 | 6.1% | 1_1271del;1635_5909del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 429
- ORF length:
- 363
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGT GCCCGGCACA CCCCCCACCC CCACTCAAGT GCTGTTCCAG CCACCAGCCT 121 ACCCGGCCCT CGGCCAGCCA GCGACCACCC TGGCACAGTT CCAGACCCCC GTGCAGGACC 181 TATGCTTGGC CTATCGGGAC TCCTTGCAGG CCCACCGTTC AGGGAGCCTG CTCTCGGGGA 241 GTACAGGCTC ATCCCTCCAC ACCCCGTACC AACCGCTGCA GCCCTTGGAT ATGTGTCCCG 301 TGCCCGTCCC TGCATCCCTT AGCATGCATA TGGCCATTGC AGCTGAGCCC AGGCACTGCC 361 TCGCCACCAC CTATGGAAGC AGCTACTTCA GTGGGAGCCA CATGTTCCCC ACCGGCTGCT 421 TTGACAGATA CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa 481 tttgttgcaa cgaac