Construct: ORF ccsbBroadEn_12592

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015288.1_s300c1, BRDN0000387251
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
VTCN1 (79679)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79679 VTCN1 V-set domain containing T c... NM_001253849.1 100% 100%
2 human 79679 VTCN1 V-set domain containing T c... NM_001253850.1 82.3% 71.8% (many diffs)
3 human 79679 VTCN1 V-set domain containing T c... NM_024626.4 66.3% 66.3% 1_285del
4 human 79679 VTCN1 V-set domain containing T c... XM_017002335.2 65.1% 65.1% 1_300del
5 human 79679 VTCN1 V-set domain containing T c... XM_011542143.2 56.3% 56.3% 1_435del
6 human 79679 VTCN1 V-set domain containing T c... NR_045603.2 20.8% 1_447del;1009_2695del
7 human 79679 VTCN1 V-set domain containing T c... NR_045604.2 13.6% 1_357del;431_432ins206;713_2399del
8 mouse 242122 Vtcn1 V-set domain containing T c... NM_178594.3 56.3% 59% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
627
ORF length:
561
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTT CAGAGGCCGG ACAGCAGTGT TTGCTGATCA AGTGATAGTT GGCAATGCCT
121CTTTGCGGCT GAAAAACGTG CAACTCACAG ATGCTGGCAC CTACAAATGT TATATCATCA
181CTTCTAAAGG CAAGGGGAAT GCTAACCTTG AGTATAAAAC TGGAGCCTTC AGCATGCCGG
241AAGTGAATGT GGACTATAAT GCCAGCTCAG AGACCTTGCG GTGTGAGGCT CCCCGATGGT
301TCCCCCAGCC CACAGTGGTC TGGGCATCCC AAGTTGACCA GGGAGCCAAC TTCTCGGAAG
361TCTCCAATAC CAGCTTTGAG CTGAACTCTG AGAATGTGAC CATGAAGGTT GTGTCTGTGC
421TCTACAATGT TACGATCAAC AACACATACT CCTGTATGAT TGAAAATGAC ATTGCCAAAG
481CAACAGGGGA TATCAAAGTG ACAGAATCGG AGATCAAAAG GCGGAGTCAC CTACAGCTGC
541TAAACTCAAA GGCTTCTCTG TGTGTCTCTT CTTTCTTTGC CATCAGCTGG GCACTTCTGC
601CTCTCAGCCC TTACCTGATG CTAAAATACC CAACTTTCTT GTACAAAGTt ggcattataa
661gaaagcattg cttatcaatt tgttgcaacg aac

Download FASTA (ORF) (Full)