Construct: ORF ccsbBroadEn_12611
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011215.1_s300c1, BRDN0000390628
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TTLL7 (79739)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79739 | TTLL7 | tubulin tyrosine ligase like 7 | XM_017002349.2 | 74.1% | 73.9% | (many diffs) |
| 2 | human | 79739 | TTLL7 | tubulin tyrosine ligase like 7 | XM_024449807.1 | 74.1% | 73.9% | (many diffs) |
| 3 | human | 79739 | TTLL7 | tubulin tyrosine ligase like 7 | NM_001350215.2 | 55.3% | 55.2% | (many diffs) |
| 4 | human | 79739 | TTLL7 | tubulin tyrosine ligase like 7 | NM_001350214.2 | 53.6% | 53.5% | (many diffs) |
| 5 | human | 79739 | TTLL7 | tubulin tyrosine ligase like 7 | NM_024686.6 | 53.6% | 53.5% | (many diffs) |
| 6 | human | 79739 | TTLL7 | tubulin tyrosine ligase like 7 | XR_001737415.2 | 27.5% | (many diffs) | |
| 7 | human | 79739 | TTLL7 | tubulin tyrosine ligase like 7 | XM_011542159.3 | 27.4% | 27% | (many diffs) |
| 8 | human | 79739 | TTLL7 | tubulin tyrosine ligase like 7 | XR_001737411.2 | 18% | (many diffs) | |
| 9 | human | 79739 | TTLL7 | tubulin tyrosine ligase like 7 | XR_946760.3 | 17.9% | (many diffs) | |
| 10 | human | 79739 | TTLL7 | tubulin tyrosine ligase like 7 | XR_001737413.2 | 17.8% | (many diffs) | |
| 11 | human | 79739 | TTLL7 | tubulin tyrosine ligase like 7 | XR_001737409.2 | 17.8% | 1_1237del;2669_8005del | |
| 12 | human | 79739 | TTLL7 | tubulin tyrosine ligase like 7 | XR_001737412.2 | 17.8% | 1_1237del;1788_1789insGAAG;2665_8001del | |
| 13 | human | 79739 | TTLL7 | tubulin tyrosine ligase like 7 | XR_946758.3 | 17.8% | (many diffs) | |
| 14 | human | 79739 | TTLL7 | tubulin tyrosine ligase like 7 | XR_001737414.2 | 17.7% | (many diffs) | |
| 15 | human | 79739 | TTLL7 | tubulin tyrosine ligase like 7 | XR_001737410.2 | 17.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1497
- ORF length:
- 1431
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTG TAGACCTGGT CAACCTCCAG GAAGCGAAAG TGTCTGCTTT GAAGTCCTGG 121 GATTTGATAT TTTGTTGGAT AGAAAACTAA AGCCATGGCT TCTGGAGATT AACCGAGCCC 181 CAAGCTTTGG AACTGATCAG AAAATAGACT ATGATGTAAA AAGGGGAGTG CTGCTAAATG 241 CGTTGAAGCT ACTAAACATA AGGACCAGTG ACAAAAGAAG AAACTTGGCC AAACAAAAAG 301 CTGAGGCTCA AAGGAGGCTC TATGGTCAAA ATTCAATTAA AAGGCTCTTA CCAGGCTCCT 361 CAGACTGGGA ACAGCAGAGA CACCAGTTGG AGAGGCGGAA AGAAGAGTTG AAAGAGAGAC 421 TCGCTCAAGT ACGAAAGCAG ATCTCACGAG AAGAACATGA AAATCGACAT ATGGGGAATT 481 ATAGACGAAT TTATCCTCCT GAAGATAAAG CATTACTTGA AAAGTATGAA AATTTGTTAG 541 CTGTTGCCTT TCAGACCTTC CTTTCAGGAA GAGCAGCTTC ATTCCAGCGA GAGTTGAATA 601 ATCCTTTGAA AAGGATGAAG GAAGAAGATA TTTTGGATCT TCTGGAGCAA TGTGAAATTG 661 ATGATGAAAA GTTGATGGGA AAAACTACCA AGACTCGAGG ACCAAAGCCT CTGTGTTCTA 721 TGCCTGAGAG TACTGAGATA ATGAAAAGAC CAAAGTACTG CAGCAGTGAC AGCAGTTATG 781 ATAGTAGCAG CAGCTCTTCA GAATCTGACG AAAATGAAAA AGAAGAGTAC CAAAATAAGA 841 AAAGAGAAAA GCAAGTTACA TATAATCTTA AACCCTCCAA CCACTACAAA TTAATTCAAC 901 AACCCAGCTC CATAAGACGT TCAGTCAGCT GCCCTCGGTC CATCTCTGCT CAATCACCTT 961 CCAGTGGGGA CACCCGCCCA TTTTCTGCTC AACAAATGAT ATCTGTGTCA CGGCCAACTT 1021 CTGCATCTCG GTCACATTCC TTAAACCGTG CTTCCTCCTA CATGAGGCAT CTGCCTCACA 1081 GTAATGATGC CTGCTCTACC AACTCTCAAG TGAGTGAGTC TTTGCGGCAA CTGAAAACAA 1141 AAGAACAAGA AGATGATCTA ACAAGTCAGA CCTTATTTGT TCTCAAAGAC ATGAAGATCC 1201 GGTTTCCAGG AAAGTCAGAT GCAGAATCAG AACTTCTGAT AGAAGATATC ATTGATAACT 1261 GGAAGTATCA TAAAACCAAA GTGGCTTCAT ATTGGCTCAT AAAATTGGAC TCTGTAAAAC 1321 AACGAAAAGT TTTGGACATA GTGAAAACAA GTATTCGTAC AGTTCTTCCA CGCATCTGGA 1381 AGGTGCCTGA TGTTGAAGAA GTAAATTTAT ATCGGATTTT CAACCGGGTT TTTAATCGCT 1441 TACTCTGGAG TCGTGGCCAA GGGCTGTGGA ACTGTTTCTG TGATTCAGGT TACGTGTACC 1501 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 1561 aac