Transcript: Human XM_011542159.3

PREDICTED: Homo sapiens tubulin tyrosine ligase like 7 (TTLL7), transcript variant X7, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
TTLL7 (79739)
Length:
2009
CDS:
293..1894

Additional Resources:

NCBI RefSeq record:
XM_011542159.3
NBCI Gene record:
TTLL7 (79739)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011542159.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000158427 CCTCTGGATTATACCTTTGTT pLKO.1 656 CDS 100% 5.625 7.875 N TTLL7 n/a
2 TRCN0000353691 CCTCTGGATTATACCTTTGTT pLKO_005 656 CDS 100% 5.625 7.875 N TTLL7 n/a
3 TRCN0000136641 GCGAATGGGTACAGAGAAGTA pLKO.1 970 CDS 100% 4.950 6.930 N TTLL7 n/a
4 TRCN0000330657 GCGAATGGGTACAGAGAAGTA pLKO_005 970 CDS 100% 4.950 6.930 N TTLL7 n/a
5 TRCN0000353692 GGGAATTATAGACGAATTTAT pLKO_005 1646 CDS 100% 15.000 10.500 N TTLL7 n/a
6 TRCN0000134378 GTCCAATTTGACCCAGTTATA pLKO.1 1006 CDS 100% 13.200 9.240 N TTLL7 n/a
7 TRCN0000160330 CCTGAAGATAAAGCATTACTT pLKO.1 1670 CDS 100% 5.625 3.938 N TTLL7 n/a
8 TRCN0000160079 CAGGATCATTTGATTGTTCAA pLKO.1 836 CDS 100% 4.950 3.465 N TTLL7 n/a
9 TRCN0000160387 CCATCAAATGGTTTACAGAAT pLKO.1 1110 CDS 100% 4.950 3.465 N TTLL7 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011542159.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12610 pDONR223 100% 98% 97.2% None (many diffs) n/a
2 ccsbBroad304_12610 pLX_304 0% 98% 97.2% V5 (many diffs) n/a
3 TRCN0000466520 ATACGCACAAGGAAGCCATGCTGT pLX_317 22.5% 98% 97.2% V5 (many diffs) n/a
4 ccsbBroadEn_12611 pDONR223 100% 27.4% 27% None (many diffs) n/a
5 ccsbBroad304_12611 pLX_304 0% 27.4% 27% V5 (many diffs) n/a
6 TRCN0000471057 CCATAGTTATCAATTCGAACCTTA pLX_317 23.2% 27.4% 27% V5 (many diffs) n/a
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