Construct: ORF ccsbBroadEn_12629
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009200.1_s300c1, BRDN0000394141
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CCDC102B (79839)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79839 | CCDC102B | coiled-coil domain containi... | XM_017025980.1 | 30.4% | 25.2% | (many diffs) |
| 2 | human | 79839 | CCDC102B | coiled-coil domain containi... | XM_017025978.1 | 30.3% | 25.2% | (many diffs) |
| 3 | human | 79839 | CCDC102B | coiled-coil domain containi... | XM_017025979.1 | 30.3% | 25.2% | (many diffs) |
| 4 | human | 79839 | CCDC102B | coiled-coil domain containi... | XM_017025977.1 | 29.4% | 24.4% | (many diffs) |
| 5 | human | 79839 | CCDC102B | coiled-coil domain containi... | XR_935251.2 | 28.5% | 1_827del;906_948del;1288_1462del | |
| 6 | human | 79839 | CCDC102B | coiled-coil domain containi... | XM_011526174.2 | 26.9% | 22.3% | (many diffs) |
| 7 | human | 79839 | CCDC102B | coiled-coil domain containi... | XM_017025976.1 | 26.9% | 22.3% | (many diffs) |
| 8 | human | 79839 | CCDC102B | coiled-coil domain containi... | NM_001093729.2 | 26.9% | 22.2% | (many diffs) |
| 9 | human | 79839 | CCDC102B | coiled-coil domain containi... | NM_024781.3 | 26.9% | 22.2% | (many diffs) |
| 10 | human | 79839 | CCDC102B | coiled-coil domain containi... | XM_017025975.1 | 26.9% | 22.2% | (many diffs) |
| 11 | human | 79839 | CCDC102B | coiled-coil domain containi... | XM_017025973.1 | 26.1% | 21.6% | (many diffs) |
| 12 | human | 79839 | CCDC102B | coiled-coil domain containi... | XM_017025974.1 | 26.1% | 21.6% | (many diffs) |
| 13 | human | 79839 | CCDC102B | coiled-coil domain containi... | XM_011526175.2 | 15.6% | 10.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 483
- ORF length:
- 417
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA AGGAAAGAGA AATGCGCACA GCTTTGGAAA AAGAAATAGA GAGACTGGAG 121 TCGGCTTTGT CTCTGTGGAA GTGGAGTTTG ACATTCTTCT TGGTCAACAT AATGATGAAA 181 TGCAAGAACT GTCAGGCAAT ATAAAGGAAG AATCCAAATC TCAAAACAGC AAAGACAGAG 241 TGATTTGTGA GTTAAGAGCA GAGCTAGAGA GATTGCAAGC TGAAAATACC TCGGAGTGGG 301 ACAAGAGGGA AATACTTGAA AGAGAAAAGC AGGGACTGGA GAGAGAAAAT AGAAGGCTGA 361 AGATCCAGGT GAAAGAAATG GAAGAGCTTT TGGATAAGAA AAATAGATTA AGTGCAAACT 421 CTCAAAGTCC TGATTTCAAG ATGTCACAAA TTGATCTGCA AGAAAAAAAC CAGGATGTAA 481 AATACCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 541 gcaacgaac