Transcript: Human XM_017025978.1

PREDICTED: Homo sapiens coiled-coil domain containing 102B (CCDC102B), transcript variant X8, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CCDC102B (79839)
Length:
2589
CDS:
167..1537

Additional Resources:

NCBI RefSeq record:
XM_017025978.1
NBCI Gene record:
CCDC102B (79839)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017025978.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000412775 ACACCAACAAATGGGATATTT pLKO_005 354 CDS 100% 15.000 10.500 N CCDC102B n/a
2 TRCN0000122397 GAGTGGGACAAGAGGGAAATA pLKO.1 1250 CDS 100% 13.200 9.240 N CCDC102B n/a
3 TRCN0000432883 GCCTAACAGATACTGCATATT pLKO_005 1699 3UTR 100% 13.200 9.240 N CCDC102B n/a
4 TRCN0000425985 TACAAGACGCTGGGTCATTAA pLKO_005 1869 3UTR 100% 13.200 9.240 N CCDC102B n/a
5 TRCN0000424111 GATCTTCCAGATGCAACAATC pLKO_005 208 CDS 100% 10.800 7.560 N CCDC102B n/a
6 TRCN0000144350 CAAACTCTCAAAGTCCTGATT pLKO.1 1371 CDS 100% 4.950 3.465 N CCDC102B n/a
7 TRCN0000122819 GCTGTAAGCATCGCTGAGAAA pLKO.1 2150 3UTR 100% 4.950 3.465 N CCDC102B n/a
8 TRCN0000139006 CCTGAATCAGATCCGTAAGCT pLKO.1 1441 CDS 100% 3.000 2.100 N CCDC102B n/a
9 TRCN0000122034 GCAATAAATCTGCCTTTGGAA pLKO.1 899 CDS 100% 3.000 2.100 N CCDC102B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017025978.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12630 pDONR223 100% 46.7% 46.7% None 1_648del;1261_1262ins171 n/a
2 ccsbBroad304_12630 pLX_304 0% 46.7% 46.7% V5 1_648del;1261_1262ins171 n/a
3 TRCN0000466818 GAACCGTGTAGAAGCAACGATACA pLX_317 40.3% 46.7% 46.7% V5 1_648del;1261_1262ins171 n/a
4 ccsbBroadEn_12629 pDONR223 100% 30.3% 25.2% None (many diffs) n/a
5 ccsbBroad304_12629 pLX_304 0% 30.3% 25.2% V5 (many diffs) n/a
6 TRCN0000472837 TTACGTCGAAGTCGCAATGCACCG pLX_317 23.3% 30.3% 25.2% V5 (many diffs) n/a
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