Construct: ORF ccsbBroadEn_12630
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008809.1_s300c1, BRDN0000387699
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CCDC102B (79839)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79839 | CCDC102B | coiled-coil domain containi... | NM_001093729.2 | 57.8% | 57.8% | 1_648del |
| 2 | human | 79839 | CCDC102B | coiled-coil domain containi... | NM_024781.3 | 57.8% | 57.8% | 1_648del |
| 3 | human | 79839 | CCDC102B | coiled-coil domain containi... | XM_017025975.1 | 57.8% | 57.8% | 1_648del |
| 4 | human | 79839 | CCDC102B | coiled-coil domain containi... | XM_011526174.2 | 57.6% | 57.6% | 1_648del;1536_1537insTGG |
| 5 | human | 79839 | CCDC102B | coiled-coil domain containi... | XM_017025976.1 | 57.6% | 57.6% | 1_648del;1536_1537insTGG |
| 6 | human | 79839 | CCDC102B | coiled-coil domain containi... | XM_017025973.1 | 56.2% | 56.1% | 1_648del;1539_1581delinsG |
| 7 | human | 79839 | CCDC102B | coiled-coil domain containi... | XM_017025974.1 | 56.2% | 56.1% | 1_648del;1539_1581delinsG |
| 8 | human | 79839 | CCDC102B | coiled-coil domain containi... | XM_017025978.1 | 46.7% | 46.7% | 1_648del;1261_1262ins171 |
| 9 | human | 79839 | CCDC102B | coiled-coil domain containi... | XM_017025979.1 | 46.7% | 46.7% | 1_648del;1261_1262ins171 |
| 10 | human | 79839 | CCDC102B | coiled-coil domain containi... | XM_017025980.1 | 46.5% | 46.5% | 1_648del;1261_1262ins171;1365_1366insTGG |
| 11 | human | 79839 | CCDC102B | coiled-coil domain containi... | XM_017025977.1 | 45.4% | 45.3% | 1_648del;1261_1262ins171;1368_1410delinsG |
| 12 | human | 79839 | CCDC102B | coiled-coil domain containi... | XR_935251.2 | 41.8% | 1_663del;1279_1383del;1462_1463ins197 | |
| 13 | human | 79839 | CCDC102B | coiled-coil domain containi... | XM_011526175.2 | 26.3% | 26.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 960
- ORF length:
- 891
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAAGCCCAAT CTAGATGGTG TTGATTTATT CAACAATGGT GGTTCTGGAA 121 ACGGTGAAAC GAAAACTGGG CTGAGACTGA AAGCAATAAA TCTGCCTTTG GAAAATGAAG 181 TAACTGAAAT TTCAGCTTTG CAGGTGCATT TGGATGAATT CCAAAAAATC TTATGGAAGG 241 AAAGAGAAAT GCGCACAGCT TTGGAAAAAG AAATAGAGAG ACTGGAGTCG GCTTTGTCTC 301 TGTGGAAGTG GAAGTATGAA GAACTGAAAG AATCAAAGCC AAAAAATGTG AAAGAGTTTG 361 ACATTCTTCT TGGTCAACAT AATGATGAAA TGCAAGAACT GTCAGGCAAT ATAAAGGAAG 421 AATCCAAATC TCAAAACAGC AAAGACAGAG TGATTTGTGA GTTAAGAGCA GAGCTAGAGA 481 GATTGCAAGC TGAAAATACC TCGGAGTGGG ACAAGAGGGA AATACTTGAA AGAGAAAAGC 541 AGGGACTGGA GAGAGAAAAT AGAAGGCTGA AGATCCAGGT GAAAGAAATG GAAGAGCTTT 601 TGGATAAGAA AAATAGATTA AGTGCAAACT CTCAAAGTCC TGATTTCAAG ATGTCACAAA 661 TTGATCTGCA AGAAAAAAAC CAGGAATTAC TGAACCTTCA ACATGCCTAC TATAAACTAA 721 ACAGACAATA CCAGGCAAAT ATTGCAGAAC TGACTCATGC AAACAACCGA GTGGATCAAA 781 ATGAAGCAGA AGTAAAGAAA CTAAGATTAC GAGTGGAAGA ACTAAAGCAG GGACTCAATC 841 AAAAAGAAGA TGAGCTTGAT GATTCCCTGA ATCAGATCCG TAAGCTCCAG AGGTCTCTGG 901 ATGAAGAGAA AGAAAGAAAT GAAAACTTAG AGACTGAACT CAGGCACTTG CAAAACTGGT 961 TGCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca 1021 acgaac