Construct: ORF ccsbBroadEn_12632

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013463.1_s300c1, BRDN0000387065
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MFSD13A (79847)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79847 MFSD13A major facilitator superfami... XM_024448173.1 99.8% 99.5% 653T>C
2 human 79847 MFSD13A major facilitator superfami... XM_011540167.2 67.1% 66.9% 1_360del;1013T>C
3 human 79847 MFSD13A major facilitator superfami... XM_024448171.1 67.1% 66.9% 1_360del;1013T>C
4 human 79847 MFSD13A major facilitator superfami... NM_024789.4 47.5% 47.3% 1_813del;1466T>C
5 human 79847 MFSD13A major facilitator superfami... XM_006717973.3 47.5% 47.3% 1_813del;1466T>C
6 human 79847 MFSD13A major facilitator superfami... XM_006717974.3 47.5% 47.3% 1_813del;1466T>C
7 human 79847 MFSD13A major facilitator superfami... XM_011540160.2 47.5% 47.3% 1_813del;1466T>C
8 human 79847 MFSD13A major facilitator superfami... XM_011540163.2 47.5% 47.3% 1_813del;1466T>C
9 human 79847 MFSD13A major facilitator superfami... XM_017016654.1 47.5% 47.3% 1_813del;1466T>C
10 human 79847 MFSD13A major facilitator superfami... XM_017016655.1 47.5% 47.3% 1_813del;1466T>C
11 human 79847 MFSD13A major facilitator superfami... XM_017016656.1 47.5% 47.3% 1_813del;1466T>C
12 human 79847 MFSD13A major facilitator superfami... XM_011540169.3 47.4% 43.4% (many diffs)
13 human 79847 MFSD13A major facilitator superfami... XM_017016657.1 33.5% 30.9% (many diffs)
14 human 79847 MFSD13A major facilitator superfami... XM_017016658.2 33.5% 30.9% (many diffs)
15 mouse 75146 Mfsd13a major facilitator superfami... NM_029186.2 41.9% 43.3% (many diffs)
16 mouse 75146 Mfsd13a major facilitator superfami... XR_386522.1 21.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
804
ORF length:
738
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA CCTGGTGCAG GTCTTCCACT GCCACTTCAA CAGCAACTTC TTCCCTCTCT
121TCCTGGAGCA TCTGTTGTCC GACCATATCT CCCTTTCCAC GGGCTCCATC CTGTTGGGCC
181TCTCCTATGT CGCTCCCCAT CTCAACAACC TCTACTTCCT GTCCCTGTGC CGGCGCTGGG
241GCGTCTACGC GGTGGTGCGG GGGCTCTTCC TGCTCAAGCT GGGACTTAGC CTGCTCATGT
301TGTTGGCCGG CCCGGACCAC CTCAGCCTGC TGTGCCTCTT CATTGCCAGC AACCGCGTCT
361TCACTGAGGG CACCTGTAAG CTGCTGACCT TGGTGGTCAC TGACCTGGTA GACGAGGACC
421TGGTGCTGAA CCACCGCAAG CAGGCAGCCT CGGCACTCCT CTTTGGCATG GTTGCCTTGG
481TGACCAAGCC AGGCCAGACC TTTGCCCCGC TGCTGGGCAC CTGGCTGCTC TGTTTCTACA
541CAGGTCATGA CCTCTTCCAG CAGTCCCTCA TAACCCCTGT GGGGAGTGCC CATCCCTGGC
601CAGAGCCCCC AGCTCCAGCC CCTGCACAGG CCCCGACGCT CCGCCAGGGC TGCTTCTACC
661TGCTGGTGCT GGTGCCCATC ACCTGTGCTC TGCTGCAGCT CTTCACCTGG TCCCAGTCCA
721CGCTGCATGG GAGACGCCTG CACATGGTCA AGGCCCAGCG CCAGAACCTG TCACAGGCCC
781AAACCCTGGA TGTTAAGATG GTGTGCCCAA CTTTCTTGTA CAAAGTtggc attataagaa
841agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)