Construct: ORF ccsbBroadEn_12641

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007543.1_s300c1, BRDN0000386200
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LPCAT1 (79888)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79888 LPCAT1 lysophosphatidylcholine acy... XM_005248373.3 80% 80% 1_291del
2 human 79888 LPCAT1 lysophosphatidylcholine acy... XM_011514134.1 78.9% 78.9% 1_312del
3 human 79888 LPCAT1 lysophosphatidylcholine acy... XM_017009879.2 74.5% 72.3% (many diffs)
4 human 79888 LPCAT1 lysophosphatidylcholine acy... NM_024830.5 72.8% 72.8% 1_435del
5 human 79888 LPCAT1 lysophosphatidylcholine acy... XM_011514132.1 68.1% 68.1% 1_546del
6 mouse 210992 Lpcat1 lysophosphatidylcholine acy... XM_006517188.2 74.2% 79.1% (many diffs)
7 mouse 210992 Lpcat1 lysophosphatidylcholine acy... NM_145376.5 60.1% 64% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1233
ORF length:
1167
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAC GATGTCCTCC ATCGTGATGA AGGCAGAGAG CAGAGACATC CCGATCTGGG
121GAACTCTGAT CCAGTATATA CGGCCTGTGT TCGTGTCCCG GTCAGACCAG GATTCTCGCA
181GGAAAACAGT AGAAGAAATC AAGAGACGGG CGCAGTCCAA CGGAAAGTGG CCACAGATAA
241TGATTTTTCC AGAAGGAACT TGTACAAACA GGACCTGCCT AATTACCTTC AAACCTGGTG
301CATTCATCCC TGGAGCGCCC GTCCAGCCTG TGGTTTTACG ATATCCAAAT AAACTGGACA
361CCATCACATG GACGTGGCAA GGACCTGGAG CGCTGGAAAT CCTGTGGCTC ACGCTGTGTC
421AGTTTCACAA CCAAGTGGAA ATCGAGTTCC TTCCTGTGTA CAGCCCTTCT GAGGAGGAGA
481AGAGGAACCC CGCGCTGTAT GCCAGCAACG TGCGGCGAGT CATGGCCGAG GCCTTGGGTG
541TCTCCGTGAC TGACTACACG TTCGAGGACT GCCAGCTGGC CCTGGCGGAA GGACAGCTCC
601GTCTCCCCGC TGACACTTGC CTTTTAGAAT TTGCCAGGCT CGTGCGGGGC CTCGGGCTAA
661AACCAGAAAA GCTTGAAAAA GATCTGGACA GATACTCAGA AAGAGCCAGG ATGAAGGGAG
721GAGAGAAGAT AGGTATTGCG GAGTTTGCCG CCTCCCTGGA AGTCCCCGTT TCTGACTTGC
781TGGAAGACAT GTTTTCACTG TTCGACGAGA GCGGCAGCGG CGAGGTGGAC CTGCGAGAGT
841GTGTGGTTGC CCTGTCTGTC GTCTGCCGGC CGGCCCGGAC CCTGGACACC ATCCAGCTGG
901CTTTCAAGAT GTACGGAGCG CAAGAGGACG GCAGCGTCGG CGAAGGTGAC CTGTCCTGCA
961TCCTCAAGAC GGCCCTGGGG GTGGCAGAGC TCACCGTGAC CGACCTATTC CGAGCCATTG
1021ACCAAGAGGA GAAGGGGAAG ATCACATTCG CTGACTTCCA CAGGTTTGCA GAAATGTACC
1081CTGCCTTCGC AGAGGAATAC CTGTACCCGG ATCAGACACA TTTCGAAAGC TGTGCAGAGA
1141CCTCACCTGC GCCAATCCCA AACGGCTTCT GTGCCGATTT CAGCCCGGAA AACTCAGACG
1201CTGGGCGGAA GCCTGTTCGC AAGAAGCTGG ATTACCCAAC TTTCTTGTAC AAAGTtggca
1261ttataagaaa gcattgctta tcaatttgtt gcaacgaac

Download FASTA (ORF) (Full)

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