Construct: ORF ccsbBroadEn_12681
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012962.1_s300c1, BRDN0000391845
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CHD9 (80205)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 80205 | CHD9 | chromodomain helicase DNA b... | XR_001751994.2 | 4.2% | 1_687del;1045_8380del | |
| 2 | human | 80205 | CHD9 | chromodomain helicase DNA b... | NM_001352127.2 | 4.1% | .8% | 1_241del;599_8643del |
| 3 | human | 80205 | CHD9 | chromodomain helicase DNA b... | NM_025134.6 | 4.1% | .8% | 1_241del;599_8643del |
| 4 | human | 80205 | CHD9 | chromodomain helicase DNA b... | XM_017023723.2 | 4.1% | .8% | 1_241del;599_8643del |
| 5 | human | 80205 | CHD9 | chromodomain helicase DNA b... | XM_017023722.2 | 4.1% | .8% | 1_241del;599_8646del |
| 6 | human | 80205 | CHD9 | chromodomain helicase DNA b... | NM_001308319.1 | 4.1% | .8% | 1_241del;599_8691del |
| 7 | human | 80205 | CHD9 | chromodomain helicase DNA b... | XM_017023721.1 | 4.1% | .8% | 1_241del;599_8691del |
| 8 | human | 80205 | CHD9 | chromodomain helicase DNA b... | XM_005256168.4 | 4.1% | .8% | 1_241del;599_8694del |
| 9 | human | 80205 | CHD9 | chromodomain helicase DNA b... | XM_005256169.2 | 4.1% | .8% | 1_241del;599_8694del |
| 10 | human | 80205 | CHD9 | chromodomain helicase DNA b... | XM_006721281.2 | 4.1% | .8% | 1_241del;599_8694del |
| 11 | human | 80205 | CHD9 | chromodomain helicase DNA b... | XM_006721283.3 | 4.1% | .8% | 1_241del;599_8694del |
| 12 | human | 80205 | CHD9 | chromodomain helicase DNA b... | XM_011523347.2 | 4.1% | .8% | 1_241del;599_8694del |
| 13 | human | 80205 | CHD9 | chromodomain helicase DNA b... | XM_017023718.2 | 4.1% | .8% | 1_241del;599_8694del |
| 14 | human | 80205 | CHD9 | chromodomain helicase DNA b... | XM_017023719.1 | 4.1% | .8% | 1_241del;599_8694del |
| 15 | human | 80205 | CHD9 | chromodomain helicase DNA b... | XM_017023720.1 | 4.1% | .8% | 1_241del;599_8694del |
| 16 | human | 80205 | CHD9 | chromodomain helicase DNA b... | XM_024450459.1 | 4.1% | .8% | 1_241del;599_8694del |
| 17 | human | 80205 | CHD9 | chromodomain helicase DNA b... | XR_001751993.1 | 4% | 1_687del;1045_8732del | |
| 18 | human | 80205 | CHD9 | chromodomain helicase DNA b... | XR_001751995.2 | 3% | 1_688del;1046_11755del | |
| 19 | mouse | 109151 | Chd9 | chromodomain helicase DNA b... | XM_017312520.1 | 3.6% | .8% | (many diffs) |
| 20 | mouse | 109151 | Chd9 | chromodomain helicase DNA b... | NM_177224.2 | 3.6% | .8% | (many diffs) |
| 21 | mouse | 109151 | Chd9 | chromodomain helicase DNA b... | XM_017312519.1 | 3.6% | .8% | (many diffs) |
| 22 | mouse | 109151 | Chd9 | chromodomain helicase DNA b... | XM_006530570.3 | 3.6% | .8% | (many diffs) |
| 23 | mouse | 109151 | Chd9 | chromodomain helicase DNA b... | NM_001310530.1 | 3.6% | .8% | (many diffs) |
| 24 | mouse | 109151 | Chd9 | chromodomain helicase DNA b... | XM_006530569.2 | 3.6% | .8% | (many diffs) |
| 25 | mouse | 109151 | Chd9 | chromodomain helicase DNA b... | XM_011248272.2 | 3.6% | .8% | (many diffs) |
| 26 | mouse | 109151 | Chd9 | chromodomain helicase DNA b... | XM_011248273.2 | 3.6% | .8% | (many diffs) |
| 27 | mouse | 109151 | Chd9 | chromodomain helicase DNA b... | XM_011248274.2 | 3.6% | .8% | (many diffs) |
| 28 | mouse | 109151 | Chd9 | chromodomain helicase DNA b... | XM_011248275.2 | 3.6% | .8% | (many diffs) |
| 29 | mouse | 109151 | Chd9 | chromodomain helicase DNA b... | XM_017312517.1 | 3.6% | .8% | (many diffs) |
| 30 | mouse | 109151 | Chd9 | chromodomain helicase DNA b... | XM_017312518.1 | 3.6% | .8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 423
- ORF length:
- 357
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTT AATCAATCTT TTGGTAGCCC AGCTGAACAT GTGTTATCTC CACACTCTCA 121 GTTTAATTGT TCTCCAATCC ATCCCCAAAA CCAACCCAAT GGTTTGTTTC CAGATGTATC 181 AGATGGCAGT CCAATGTGGG GCCATCAGAC AGCTACTACC ATTTCAAATC AAAATGGATC 241 TCCTTTTCAC CAACAAGGAC ATTCACACTC TATGCATCAA AATAAAAGCT TTGTGGCACA 301 CCATGACTTT GCCTTATTTC AGGCCAATGA ACAACAAACA CAGTGTACTT CACTACGCTC 361 ACAACAAAAC AGAAATAATC TCAACCCAGG GCAGAATTCT CTTAGCCAGT CTAAAAATTT 421 TATGCCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 481 gcaacgaac