Construct: ORF ccsbBroadEn_12716
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006415.1_s300c1, BRDN0000397557
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GDPD5 (81544)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 81544 | GDPD5 | glycerophosphodiester phosp... | NM_001351168.1 | 92.9% | 92.7% | 0_1ins81;703G>A |
| 2 | human | 81544 | GDPD5 | glycerophosphodiester phosp... | XM_011545286.1 | 92.6% | 92.5% | 0_1ins81;703G>A;932_934delCAG |
| 3 | human | 81544 | GDPD5 | glycerophosphodiester phosp... | NM_001351167.1 | 82.7% | 82.6% | 1_240del;1024G>A |
| 4 | human | 81544 | GDPD5 | glycerophosphodiester phosp... | XM_011545281.2 | 82.6% | 82.4% | 1_240del;1024G>A;1253_1255delCAG |
| 5 | human | 81544 | GDPD5 | glycerophosphodiester phosp... | XM_011545280.1 | 70.4% | 70.3% | 1_483del;1267G>A;1496_1498delCAG |
| 6 | human | 81544 | GDPD5 | glycerophosphodiester phosp... | NM_030792.8 | 63.9% | 63.8% | 1_654del;1438G>A |
| 7 | human | 81544 | GDPD5 | glycerophosphodiester phosp... | XM_006718697.3 | 63.9% | 63.8% | 1_654del;1438G>A |
| 8 | human | 81544 | GDPD5 | glycerophosphodiester phosp... | XM_011545276.2 | 63.8% | 63.6% | 1_654del;1438G>A;1667_1669delCAG |
| 9 | human | 81544 | GDPD5 | glycerophosphodiester phosp... | XM_011545277.2 | 63.8% | 63.6% | 1_654del;1438G>A;1667_1669delCAG |
| 10 | human | 81544 | GDPD5 | glycerophosphodiester phosp... | XM_011545278.2 | 63.8% | 63.6% | 1_654del;1438G>A;1667_1669delCAG |
| 11 | human | 81544 | GDPD5 | glycerophosphodiester phosp... | XM_011545279.2 | 63.8% | 63.6% | 1_654del;1438G>A;1667_1669delCAG |
| 12 | mouse | 233552 | Gdpd5 | glycerophosphodiester phosp... | XM_006507637.1 | 63.6% | 66% | (many diffs) |
| 13 | mouse | 233552 | Gdpd5 | glycerophosphodiester phosp... | XM_006507636.1 | 61% | 63.4% | (many diffs) |
| 14 | mouse | 233552 | Gdpd5 | glycerophosphodiester phosp... | XM_006507635.1 | 57.2% | 59.4% | (many diffs) |
| 15 | mouse | 233552 | Gdpd5 | glycerophosphodiester phosp... | NM_201352.2 | 55.8% | 58.1% | (many diffs) |
| 16 | mouse | 233552 | Gdpd5 | glycerophosphodiester phosp... | XM_017322181.1 | 55.8% | 58.1% | (many diffs) |
| 17 | mouse | 233552 | Gdpd5 | glycerophosphodiester phosp... | XM_006507632.1 | 55.3% | 57.5% | (many diffs) |
| 18 | mouse | 233552 | Gdpd5 | glycerophosphodiester phosp... | XM_006507633.1 | 55.3% | 57.5% | (many diffs) |
| 19 | mouse | 233552 | Gdpd5 | glycerophosphodiester phosp... | XM_006507634.1 | 55.3% | 57.5% | (many diffs) |
| 20 | mouse | 233552 | Gdpd5 | glycerophosphodiester phosp... | XM_011241738.1 | 55.3% | 57.5% | (many diffs) |
| 21 | mouse | 233552 | Gdpd5 | glycerophosphodiester phosp... | XM_006507639.1 | 14.7% | 15.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1227
- ORF length:
- 1161
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA GAAGAAAGAC CTCGGCCCCA AGCCTGCTCT CATTGGCCAC CGCGGGGCCC 121 CCATGCTGGC TCCAGAGCAC ACGCTCATGT CCTTCCGGAA GGCCCTCGAG CAGAAGCTGT 181 ACGGGCTCCA GGCTGACATT ACCATCAGCC TGGACGGCGT GCCCTTCCTC ATGCATGACA 241 CCACCCTGCG GCGCACCACC AACGTGGAGG AGGAGTTCCC GGAGCTGGCC CGCAGGCCTG 301 CCTCCATGCT TAACTGGACC ACCCTGCAGA GACTCAACGC TGGCCAGTGG TTCCTGAAGA 361 CTGACCCCTT CTGGACAGCC AGCTCCCTGT CACCCTCCGA CCACAGAGAG GCCCAGAACC 421 AGTCCATCTG CAGCCTGGCA GAGCTCCTGG AGCTGGCCAA GGGCAATGCC ACACTGCTGC 481 TCAACCTGCG TGACCCGCCC CGGGAGCACC CCTACCGCAG CAGTTTTATC AACGTGACTC 541 TGGAGGCCGT GCTGCACTCC GGCTTCCCCC AGCACCAGGT CATGTGGCTG CCTAGCAGGC 601 AGAGGCCCCT GGTGCGGAAG GTGGCTCCCG GCTTCCAACA GACATCAGGC TCCAAGGAGG 661 CAGTCGCCAG CCTGCGGAGA GGCCACATCC AGCGGCTGAA CCTGCGCTAC ACTCAGGTGT 721 CCCGCCAGGA GCTCAGGGAC TACGCGTCCT GGAACCTGAG TGTGAACCTC TACACAGTCA 781 ACGCACCGTG GCTCTTCTCC CTGCTGTGGT GTGCGGGGGT CCCATCCGTC ACCTCTGACA 841 ACTCCCACAC CCTGTCCCAG GTGCCTTCCC CCCTCTGGAT CATGCCCCCG GACGAGTACT 901 GTCTCATGTG GGTCACTGCC GACCTGGTCT CCTTCACCCT CATCGTGGGC ATCTTCGTGC 961 TCCAGAAGTG GCGCCTGGGT GGCATACGGA GCTACAACCC TGAGCAGATC ATGCTGAGTG 1021 CTGCGGTGCG CCGGACCAGC CGGGACGTCA GCATCATGAA GGAGAAGCTT ATTTTCTCAG 1081 AGATCAGCGA TGGTGTAGAG GTCTCCGATG TGCTCTCCGT ATGTTCAGAC AACAGTTATG 1141 ACACATATGC CAACAGCACC GCCACCCCTG TGGGCCCCCG AGGGGGTGGC AGCCACACCA 1201 AGACCCTCAT AGAGCGGAGT GGGCGTTACC CAACTTTCTT GTACAAAGTt ggcattataa 1261 gaaagcattg cttatcaatt tgttgcaacg aac