Construct: ORF ccsbBroadEn_12751
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001666.1_s300c1, BRDN0000396096
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FAM107B (83641)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 83641 | FAM107B | family with sequence simila... | NM_001282695.1 | 100% | 100% | |
| 2 | human | 83641 | FAM107B | family with sequence simila... | NM_001282696.2 | 100% | 100% | |
| 3 | human | 83641 | FAM107B | family with sequence simila... | NM_001282697.2 | 100% | 100% | |
| 4 | human | 83641 | FAM107B | family with sequence simila... | NM_001282698.2 | 100% | 100% | |
| 5 | human | 83641 | FAM107B | family with sequence simila... | NM_001282699.1 | 100% | 100% | |
| 6 | human | 83641 | FAM107B | family with sequence simila... | NM_001282700.2 | 100% | 100% | |
| 7 | human | 83641 | FAM107B | family with sequence simila... | NM_001282701.2 | 100% | 100% | |
| 8 | human | 83641 | FAM107B | family with sequence simila... | NM_001282702.2 | 100% | 100% | |
| 9 | human | 83641 | FAM107B | family with sequence simila... | NM_001282703.1 | 100% | 100% | |
| 10 | human | 83641 | FAM107B | family with sequence simila... | NM_001320735.2 | 100% | 100% | |
| 11 | human | 83641 | FAM107B | family with sequence simila... | NM_001320736.2 | 100% | 100% | |
| 12 | human | 83641 | FAM107B | family with sequence simila... | NM_001320737.1 | 100% | 100% | |
| 13 | human | 83641 | FAM107B | family with sequence simila... | NM_001320738.1 | 100% | 100% | |
| 14 | human | 83641 | FAM107B | family with sequence simila... | NM_001320739.2 | 100% | 100% | |
| 15 | human | 83641 | FAM107B | family with sequence simila... | NM_001320740.1 | 100% | 100% | |
| 16 | human | 83641 | FAM107B | family with sequence simila... | XM_005252616.4 | 100% | 100% | |
| 17 | human | 83641 | FAM107B | family with sequence simila... | XM_011519735.1 | 100% | 100% | |
| 18 | human | 83641 | FAM107B | family with sequence simila... | XM_017016749.1 | 100% | 100% | |
| 19 | human | 83641 | FAM107B | family with sequence simila... | NM_001320741.2 | 77% | 77% | 1_117del |
| 20 | human | 83641 | FAM107B | family with sequence simila... | NM_031453.3 | 42.8% | 42.8% | 1_525del |
| 21 | mouse | 66540 | Fam107b | family with sequence simila... | NM_025626.4 | 90.5% | 98.4% | (many diffs) |
| 22 | mouse | 66540 | Fam107b | family with sequence simila... | XM_011238984.2 | 76.5% | 83.2% | (many diffs) |
| 23 | mouse | 66540 | Fam107b | family with sequence simila... | XM_006497520.3 | 74.6% | 81.1% | (many diffs) |
| 24 | mouse | 66540 | Fam107b | family with sequence simila... | XM_006497519.3 | 73.7% | 80.1% | (many diffs) |
| 25 | mouse | 66540 | Fam107b | family with sequence simila... | XM_006497518.1 | 64.8% | 70.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 459
- ORF length:
- 393
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC CGAGCCAGAC TACATAGAAG ATGACAATCC TGAACTCATT AGGCCTCAGA 121 AACTGATCAA TCCTGTAAAA ACCTCCCGGA ACCATCAAGA TCTTCACAGA GAACTTCTTA 181 TGAATCAAAA AAGGGGTCTT GCTCCTCAGA ACAAACCAGA ATTGCAGAAG GTGATGGAAA 241 AAAGAAAACG AGACCAAGTA ATAAAGCAGA AGGAAGAAGA AGCACAGAAG AAGAAATCTG 301 ACTTGGAAAT AGAGCTATTA AAACGGCAGC AGAAGTTGGA GCAGCTTGAA CTTGAGAAGC 361 AGAAATTGCA AGAAGAGCAA GAAAATGCCC CCGAGTTTGT GAAGGTGAAA GGCAATCTCA 421 GGAGAACAGG CCAAGAAGTC GCCCAAGCCC AGGAGTCCTA CCCAACTTTC TTGTACAAAG 481 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac