Construct: ORF ccsbBroadEn_12764
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014604.1_s300c1, BRDN0000388674
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- IMMP2L (83943)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 83943 | IMMP2L | inner mitochondrial membran... | NM_001350962.2 | 100% | 100% | |
| 2 | human | 83943 | IMMP2L | inner mitochondrial membran... | NM_001350963.2 | 90.5% | 92.7% | 306_312delGTTTCCCins25 |
| 3 | human | 83943 | IMMP2L | inner mitochondrial membran... | XM_024446958.1 | 84.9% | 67.7% | (many diffs) |
| 4 | human | 83943 | IMMP2L | inner mitochondrial membran... | XM_024446957.1 | 79.9% | 72.1% | (many diffs) |
| 5 | human | 83943 | IMMP2L | inner mitochondrial membran... | XM_024446960.1 | 79% | 71.6% | (many diffs) |
| 6 | human | 83943 | IMMP2L | inner mitochondrial membran... | XM_024446959.1 | 78.7% | 73.2% | (many diffs) |
| 7 | human | 83943 | IMMP2L | inner mitochondrial membran... | XM_011516611.2 | 78.3% | 67.7% | (many diffs) |
| 8 | human | 83943 | IMMP2L | inner mitochondrial membran... | XM_024446961.1 | 77.2% | 73.6% | (many diffs) |
| 9 | human | 83943 | IMMP2L | inner mitochondrial membran... | XM_024446962.1 | 73.7% | 72.7% | 239delT;241T>G;246_247ins85 |
| 10 | human | 83943 | IMMP2L | inner mitochondrial membran... | NM_001350964.2 | 73.6% | 72.7% | (many diffs) |
| 11 | human | 83943 | IMMP2L | inner mitochondrial membran... | XM_011516609.2 | 72.4% | 73.9% | 240_323del;390_396delGTTTCCCins25 |
| 12 | human | 83943 | IMMP2L | inner mitochondrial membran... | NM_001244606.2 | 60.6% | 59.4% | (many diffs) |
| 13 | human | 83943 | IMMP2L | inner mitochondrial membran... | NM_001350959.2 | 60.6% | 59.4% | (many diffs) |
| 14 | human | 83943 | IMMP2L | inner mitochondrial membran... | NM_001350960.2 | 60.6% | 59.4% | (many diffs) |
| 15 | human | 83943 | IMMP2L | inner mitochondrial membran... | NM_032549.4 | 60.6% | 59.4% | (many diffs) |
| 16 | human | 83943 | IMMP2L | inner mitochondrial membran... | XM_011516608.2 | 60.2% | 59% | (many diffs) |
| 17 | human | 83943 | IMMP2L | inner mitochondrial membran... | XM_017012704.1 | 60.2% | 59% | (many diffs) |
| 18 | human | 83943 | IMMP2L | inner mitochondrial membran... | XM_017012703.1 | 57.6% | 56.5% | (many diffs) |
| 19 | human | 83943 | IMMP2L | inner mitochondrial membran... | NM_001350961.2 | 52.2% | 51.2% | (many diffs) |
| 20 | human | 83943 | IMMP2L | inner mitochondrial membran... | XM_017012701.1 | 44.2% | 43.3% | (many diffs) |
| 21 | human | 83943 | IMMP2L | inner mitochondrial membran... | XM_017012702.1 | 44.2% | 43.3% | (many diffs) |
| 22 | human | 83943 | IMMP2L | inner mitochondrial membran... | XM_017012699.1 | 39.6% | 38.8% | (many diffs) |
| 23 | human | 83943 | IMMP2L | inner mitochondrial membran... | XM_017012700.1 | 39.6% | 38.8% | (many diffs) |
| 24 | human | 83943 | IMMP2L | inner mitochondrial membran... | XM_024446956.1 | 36.5% | 33.7% | (many diffs) |
| 25 | mouse | 93757 | Immp2l | IMP2 inner mitochondrial me... | NM_053122.4 | 54.6% | 55.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 396
- ORF length:
- 330
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC ACAGTCACAA GGGTGGGTGA AAAGATACAT CAAGGCCTTT TGTAAAGGCT 121 TCTTTGTGGC GGTGCCTGTG GCAGTGACTT TCTTGGATCG GGTCGCCTGT GTGGCAAGAG 181 TAGAAGGAGC ATCGATGCAG CCTTCTTTGA ATCCTGGGGG GAGCCAGTCA TCTGATGTGG 241 TGCTTTTGAA CCACTGGAAA GTGAGGAATT TTGAAGTACA CCGTGGTGAC ATTGTATCAT 301 TGGTGTCTCC TAAAAACCCA GAACAGAAGA TCATTAAGAG AGTGATTGCT CTTGAAGGAG 361 ATATTGTCAG AGATGGGAGA AAACTGAAAA GGATATGCCC AACTTTCTTG TACAAAGTtg 421 gcattataag aaagcattgc ttatcaattt gttgcaacga ac