Construct: ORF ccsbBroadEn_12785

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004479.1_s300c1, BRDN0000390603
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
GTF2IRD2 (84163)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84163 GTF2IRD2 GTF2I repeat domain contain... NM_001281447.1 38.3% 32.1% (many diffs)
2 human 389524 GTF2IRD2B GTF2I repeat domain contain... NM_001368301.1 38.3% 32.1% (many diffs)
3 human 389524 GTF2IRD2B GTF2I repeat domain contain... NM_001003795.3 25.5% 24.1% (many diffs)
4 human 84163 GTF2IRD2 GTF2I repeat domain contain... NM_173537.4 25.5% 24.1% (many diffs)
5 human 389524 GTF2IRD2B GTF2I repeat domain contain... NM_001368302.1 21.8% 20.6% (many diffs)
6 human 84163 GTF2IRD2 GTF2I repeat domain contain... NM_001368300.1 21.8% 20.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
834
ORF length:
768
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC CCAGGTAGCA GTGTCCACCC TGCCTGTTGA AGAAGAGTCC TCCTCAGAGA
121CCAGGATGGT GGTGACATTC CTCGTGTCTG CCCTCGAATC CATGTGTAAA GAACTGGCCG
181AGTCCAAGGC AGAAGTGGCC TGCATCGCAG TGTACGAAAC AGACGTGTTT GTCGTCGGAA
241CCGAGAGAGG ATGCGCTTTT GTTAATGCCA GGACGGATTT TCAGAAAGAT TTTGCAAAAT
301ACTGCGTTGC AGAGGGACTG TGTGAGGTGA AACCTCCCTG CCCTGTGAAC GGGATGCAGG
361TCCACTCGGG CGAAACGGAA ATACTCAGGA AGGCAGTGGA GGACTATTTC TGCTTTTGTT
421ATGGTAAAGC CTTAGGGACA ACAGTGATGG TGCCTGTTCC CTATGAGAAG ATGCTGCGAG
481ACCAGTCGGC TGTGGTAGTG CAGGGGCTTC CGGAAGGCGT TGCCTTTCAA CACCCTGAGA
541ATTACGACCT TGCAACCCTG AAATGGATTT TGGAGAACAA AGCAGGGATT TCATTCATCA
601TAAATAGACC CTTCCTAGGA CCAGAGAGTC AGCTGGGTGG CCCTGGGATG GTAACAGATG
661CGGAGAGATC CATAGTATCA CCAAGTGAAA GCTGCGGCCC CATCAATGTG AAAACTGAAC
721CCATGGAAGA TTCTGGTGGG TACCAAGATG CTTTTAGAAT CAAGTATCGG CCAAGCGTGG
781TAGCTCACGC CTGTAATCCC AGCAATTTGG GAGGCCGAGG CAGGCGGATC ACTTGCCCAA
841CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)