Construct: ORF ccsbBroadEn_12793
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014240.1_s300c1, BRDN0000385969
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- USP48 (84196)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84196 | USP48 | ubiquitin specific peptidas... | XM_024450167.1 | 40.9% | 40.9% | 1_1098del |
| 2 | human | 84196 | USP48 | ubiquitin specific peptidas... | XM_011542267.3 | 40.9% | 40.9% | 1_1101del |
| 3 | human | 84196 | USP48 | ubiquitin specific peptidas... | XM_011542268.2 | 40.9% | 40.9% | 1_1101del |
| 4 | human | 84196 | USP48 | ubiquitin specific peptidas... | XM_017002497.1 | 40.9% | 40.9% | 1_1101del |
| 5 | human | 84196 | USP48 | ubiquitin specific peptidas... | XM_011542265.3 | 27.9% | 27.9% | 1_1962del |
| 6 | human | 84196 | USP48 | ubiquitin specific peptidas... | NM_001350164.2 | 26.2% | 26.2% | 1_2142del |
| 7 | human | 84196 | USP48 | ubiquitin specific peptidas... | XM_011542264.1 | 26.2% | 26.2% | 1_2142del |
| 8 | human | 84196 | USP48 | ubiquitin specific peptidas... | XM_006710955.4 | 26.2% | 26.2% | 1_2145del |
| 9 | human | 84196 | USP48 | ubiquitin specific peptidas... | NM_001350166.2 | 24.5% | 24.5% | 1_2337del |
| 10 | human | 84196 | USP48 | ubiquitin specific peptidas... | NM_001350167.2 | 24.5% | 24.5% | 1_2340del |
| 11 | human | 84196 | USP48 | ubiquitin specific peptidas... | NM_001350168.2 | 24.5% | 24.5% | 1_2340del |
| 12 | human | 84196 | USP48 | ubiquitin specific peptidas... | NM_032236.8 | 24.5% | 24.5% | 1_2343del |
| 13 | human | 84196 | USP48 | ubiquitin specific peptidas... | XR_002957781.1 | 20.4% | 1_2446del;3209_3726del | |
| 14 | human | 84196 | USP48 | ubiquitin specific peptidas... | XR_001737480.2 | 19.7% | 1_2558del;2599_2600insTATAG;3316_3833del | |
| 15 | human | 84196 | USP48 | ubiquitin specific peptidas... | XR_001737479.2 | 19.7% | 1_2561del;2602_2603insTATAG;3319_3836del | |
| 16 | human | 84196 | USP48 | ubiquitin specific peptidas... | NM_001330394.2 | 19.5% | 19.5% | 1_2343del;2727_2728ins156 |
| 17 | human | 84196 | USP48 | ubiquitin specific peptidas... | XR_001737482.2 | 7.2% | (many diffs) | |
| 18 | mouse | 170707 | Usp48 | ubiquitin specific peptidas... | XM_017320012.1 | 41.2% | 45.7% | (many diffs) |
| 19 | mouse | 170707 | Usp48 | ubiquitin specific peptidas... | XM_006538606.3 | 41.1% | 45.6% | (many diffs) |
| 20 | mouse | 170707 | Usp48 | ubiquitin specific peptidas... | XM_006538607.3 | 41.1% | 45.6% | (many diffs) |
| 21 | mouse | 170707 | Usp48 | ubiquitin specific peptidas... | XM_017320010.1 | 21% | 23.3% | (many diffs) |
| 22 | mouse | 170707 | Usp48 | ubiquitin specific peptidas... | XM_017320009.1 | 20.9% | 23.2% | (many diffs) |
| 23 | mouse | 170707 | Usp48 | ubiquitin specific peptidas... | XM_017320013.1 | 20.9% | 23.2% | (many diffs) |
| 24 | mouse | 170707 | Usp48 | ubiquitin specific peptidas... | NM_001347227.1 | 20.9% | 23.2% | (many diffs) |
| 25 | mouse | 170707 | Usp48 | ubiquitin specific peptidas... | NM_130879.2 | 20.6% | 22.9% | (many diffs) |
| 26 | mouse | 170707 | Usp48 | ubiquitin specific peptidas... | XM_017320006.1 | 20.6% | 22.8% | (many diffs) |
| 27 | mouse | 170707 | Usp48 | ubiquitin specific peptidas... | XM_017320007.1 | 20.6% | 22.8% | (many diffs) |
| 28 | mouse | 170707 | Usp48 | ubiquitin specific peptidas... | XM_017320005.1 | 20.6% | 22.8% | (many diffs) |
| 29 | mouse | 170707 | Usp48 | ubiquitin specific peptidas... | XM_017320011.1 | 17.8% | 19.5% | (many diffs) |
| 30 | mouse | 170707 | Usp48 | ubiquitin specific peptidas... | XR_001784100.1 | 11.2% | (many diffs) | |
| 31 | mouse | 170707 | Usp48 | ubiquitin specific peptidas... | XR_001784101.1 | 10.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 828
- ORF length:
- 762
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTTGCATGTT TACATTTGCT TCCATGACCA AAGAAGATTC TAAACTTATA GCTCTCATAT 121 GGCCCAGTGA GTGGCAAATG ATACAAAAGC TCTTTGTTGT GGATCATGTA ATTAAAATCA 181 CGAGAATTGA AGTGGGAGAT GTAAACCCTT CAGAAACACA GTATATTTCT GAGCCCAAAC 241 TCTGTCCAGA ATGCAGAGAA GGCTTATTGT GTCAGCAGCA GAGGGACCTG CGTGAATACA 301 CTCAAGCCAC CATCTATGTC CATAAAGTTG TGGATAATAA AAAGGTGATG AAGGATTCGG 361 CTCCGGAACT GAATGTGAGT AGTTCTGAAA CAGAGGAGGA CAAGGAAGAA GCTAAACCAG 421 ATGGAGAAAA AGATCCAGAT TTTAATCAAA GCAATGGTGG AACAAAGCGG CAAAAGATAT 481 CCCATCAAAA TTATATAGCC TATCAAAAGC AAGTTATTCG CCGAAGTATG CGACATAGAA 541 AAGTTCGTGG TGAGAAAGCA CTTCTCGTTT CTGCTAATCA GACGTTAAAA GAATTGAAAA 601 TTCAGATCAT GCATGCATTT TCAGTTGCTC CTTTTGACCA GAATTTGTCA ATTGATGGAA 661 AGATTTTAAG TGATGACTGT GCCACCCTAG GCACCCTTGG CGTCATTCCT GAATCTGTCA 721 TTTTATTGAA GGCTGATGAA CCAATTGCAG ATTATGCTGC AATGGATGAT GTCATGCAAG 781 TTTGTATGCC AGAAGAAGGG TTTAAAGGTA CTGGTCTTCT TGGACATTAC CCAACTTTCT 841 TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac