Construct: ORF ccsbBroadEn_12796
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011213.1_s300c1, BRDN0000385734
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RHBDD1 (84236)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | NM_001167608.3 | 32.9% | 31.7% | (many diffs) |
| 2 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | NM_001349069.1 | 32.9% | 31.7% | (many diffs) |
| 3 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | NM_001349071.2 | 32.9% | 31.7% | (many diffs) |
| 4 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | NM_001349072.2 | 32.9% | 31.7% | (many diffs) |
| 5 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | NM_032276.5 | 32.9% | 31.7% | (many diffs) |
| 6 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XM_017005083.1 | 32.9% | 31.7% | (many diffs) |
| 7 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XM_017005084.2 | 32.9% | 31.7% | (many diffs) |
| 8 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XM_017005085.2 | 32.9% | 31.7% | (many diffs) |
| 9 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XM_017005086.2 | 32.9% | 31.7% | (many diffs) |
| 10 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XM_017005087.2 | 32.9% | 31.7% | (many diffs) |
| 11 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XM_017005088.1 | 32.9% | 31.7% | (many diffs) |
| 12 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XM_017005090.2 | 32.9% | 31.7% | (many diffs) |
| 13 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XM_017005092.2 | 32.9% | 31.7% | (many diffs) |
| 14 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XM_017005093.1 | 27.2% | 23% | (many diffs) |
| 15 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XM_017005094.1 | 27.2% | 23% | (many diffs) |
| 16 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XM_017005095.1 | 26.9% | 23.3% | (many diffs) |
| 17 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XR_001738990.2 | 10.5% | (many diffs) | |
| 18 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XR_001738988.2 | 10.5% | (many diffs) | |
| 19 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XR_001738989.2 | 10.1% | (many diffs) | |
| 20 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XR_001738986.2 | 10% | (many diffs) | |
| 21 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XR_001738984.2 | 9.6% | (many diffs) | |
| 22 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XR_001738991.2 | 7% | (many diffs) | |
| 23 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XR_001738987.2 | 6.9% | (many diffs) | |
| 24 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XR_001738985.2 | 6.5% | (many diffs) | |
| 25 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XR_001738983.2 | 6.5% | (many diffs) | |
| 26 | human | 84236 | RHBDD1 | rhomboid domain containing 1 | XR_001738982.2 | 5.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 384
- ORF length:
- 318
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGTATGCC TGTTTTTCTT TTTAAACCGA AAGGCGGTTT TTCCTCCAGT GTTGGTTACC 121 CAGGACGGCA ATACTACTTT AATAGTTCAG GCAGCTCTGG ATATCAGGAT TATTATCCGC 181 ATGGCAGGCC AGATCACTAT GAAGAAGCAC CCAGGAACTA TGACACGTAC ACAGCAGGAC 241 TGAGTGAAGA AGAACAGCTC GAGAGAGCAT TACAAGCCAG CCTCTGGGAC CGAGGAAATA 301 CCAGAAATAG CCCACCACCC TACGGGTTTC ATCTCTCACC AGAAGAAATG AGGAGACAGC 361 GGCTTCACAG ATTCGATAGC CAGTGCCCAA TTTTCTTGTA CAAAGTtggc attataagaa 421 agcattgctt atcaatttgt tgcaacgaac