Construct: ORF ccsbBroadEn_12897
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016111.1_s300c1, BRDN0000386550
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DISP1 (84976)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84976 | DISP1 | dispatched RND transporter ... | NM_001369594.1 | 35.5% | 35.5% | 1627_4572del |
| 2 | human | 84976 | DISP1 | dispatched RND transporter ... | NM_032890.5 | 35.5% | 35.5% | 1627_4572del |
| 3 | human | 84976 | DISP1 | dispatched RND transporter ... | XM_006711592.2 | 35.5% | 35.5% | 1627_4572del |
| 4 | human | 84976 | DISP1 | dispatched RND transporter ... | XM_011510072.2 | 35.5% | 35.5% | 1627_4572del |
| 5 | human | 84976 | DISP1 | dispatched RND transporter ... | XM_011510073.2 | 35.5% | 35.5% | 1627_4572del |
| 6 | human | 84976 | DISP1 | dispatched RND transporter ... | XM_011510074.2 | 35.5% | 35.5% | 1627_4572del |
| 7 | human | 84976 | DISP1 | dispatched RND transporter ... | XM_011510075.2 | 35.5% | 35.5% | 1627_4572del |
| 8 | human | 84976 | DISP1 | dispatched RND transporter ... | XM_011510077.2 | 35.5% | 35.5% | 1627_4572del |
| 9 | human | 84976 | DISP1 | dispatched RND transporter ... | XM_017002611.1 | 35.5% | 35.5% | 1627_4572del |
| 10 | human | 84976 | DISP1 | dispatched RND transporter ... | XM_006711594.3 | 22.8% | 22.8% | 0_1ins582;1045_3990del |
| 11 | human | 84976 | DISP1 | dispatched RND transporter ... | XM_017002612.1 | 22.8% | 22.8% | 0_1ins582;1045_3990del |
| 12 | human | 84976 | DISP1 | dispatched RND transporter ... | NM_001350630.2 | 18.8% | 18.7% | (many diffs) |
| 13 | mouse | 68897 | Disp1 | dispatched RND transporter ... | NM_001278218.1 | 30% | 31.3% | (many diffs) |
| 14 | mouse | 68897 | Disp1 | dispatched RND transporter ... | NM_001278219.1 | 30% | 31.3% | (many diffs) |
| 15 | mouse | 68897 | Disp1 | dispatched RND transporter ... | NM_001278220.1 | 30% | 31.3% | (many diffs) |
| 16 | mouse | 68897 | Disp1 | dispatched RND transporter ... | NM_026866.3 | 30% | 31.3% | (many diffs) |
| 17 | mouse | 68897 | Disp1 | dispatched RND transporter ... | XM_006535596.4 | 29.4% | 30.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1692
- ORF length:
- 1626
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC TATGAGCAAT GGAAACAATG ATTTTGTGGT TCTGAGCAAC AGCAGCATCG 121 CAACCAGTGC TGCTAACCCG AGTCCCCTCA CCCCCTGTGA TGGAGACCAT GCAGCCCAGC 181 AGCTCACACC CAAAGAAGCA ACAAGAACAA AAGTGAGTCC AAATGGATGC CTGCAACTTA 241 ATGGCACGGT CAAATCATCC TTTCTGCCTT TAGACAACCA AAGAATGCCT CAGATGTTAC 301 CCCAATGCTG CCATCCTTGC CCATACCATC ACCCTTTGAC TAGCCATAGC AGTCACCAAG 361 AGTGCCATCC CGAGGCTGGC CCTGCAGCAC CCTCTGCTTT GGCCTCGTGT TGCATGCAGC 421 CACACTCCGA GTATTCTGCA TCTCTTTGTC CAAATCATTC ACCTGTGTAT CAGACTACGT 481 GCTGTCTTCA GCCCTCTCCA TCCTTCTGCC TGCATCATCC GTGGCCTGAC CATTTTCAGC 541 ATCAGCCTGT GCAACAGCAC ATAGCCAACA TAAGACCATC CAGACCTTTC AAGTTGCCAA 601 AAAGTTATGC AGCCCTGATA GCCGACTGGC CGGTGGTGGT CTTGGGCATG TGCACCATGT 661 TCATCGTAGT CTGTGCCTTG GTTGGAGTAT TAGTGCCAGA GCTCCCTGAC TTCTCTGATC 721 CATTGCTGGG TTTTGAACCA AGAGGAACAG CAATAGGCCA GAGATTGGTC ACATGGAATA 781 ATATGGTGAA AAATACAGGA TACAAAGCAA CATTAGCAAA TTATCCCTTT AAATATGCAG 841 ATGAACAAGC CAAAAGCCAT CGGGATGATA GATGGTCAGA TGATCATTAT GAAAGAGAGA 901 AAAGAGAAGT TGACTGGAAC TTCCACAAGG ACAGCTTTTT CTGCGACGTT CCAAGTGACC 961 GATATTCCAG AGTGGTATTT ACTTCATCTG GAGGGGAGAC ATTATGGAAT TTACCTGCAA 1021 TTAAATCAAT GTGCAATGTA GATAATTCCA GGATCAGATC TCATCCCCAG TTTGGTGATC 1081 TCTGCCAGAG GACCACTGCT GCCTCCTGCT GCCCCAGCTG GACACTGGGA AACTACATCG 1141 CCATTCTGAA CAATAGATCG TCCTGTCAGA AAATAGTTGA GCGAGACGTT TCTCATACCT 1201 TGAAGCTGCT TCGGACTTGT GCCAAACACT ACCAAAATGG CACTCTGGGG CCAGACTGCT 1261 GGGACATGGC AGCCAGAAGA AAGGACCAGC TCAAGTGCAC CAATGTGCCA CGCAAATGTA 1321 CCAAGTACAA TGCTGTGTAC CAGATCCTCC ATTACTTGGT GGACAAAGAC TTTATGACCC 1381 CAAAGACGGC TGACTATGCC ACGCCAGCTT TAAAATACAG CATGCTCTTC TCTCCCACAG 1441 AGAAAGGGGA GAGCATGATG AACATTTACT TGGACAACTT TGAAAACTGG AACTCTTCTG 1501 ACGGCGTGAC TACCATCACC GGGATTGAGT TTGGTATCAA ACACAGTTTG TTTCAGGATT 1561 ATCTTCTAAT GGATACTGTG TATCCTGCCA TAGCCATTGT GATTGTCCTT TTAGTTATGT 1621 GTGTCTACAC CAAGTCCATG TTTATCACTC TGATGACAAT GTTTGCAATA ATCAGTTCTT 1681 TGATTGTTTC CTACCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 1741 caatttgttg caacgaac