Construct: ORF ccsbBroadEn_12933

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003501.1_s300c1, BRDN0000392206
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TSPAN18 (90139)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 90139 TSPAN18 tetraspanin 18 NM_130783.5 91.1% 87.6% (many diffs)
2 human 90139 TSPAN18 tetraspanin 18 XM_006718373.4 91.1% 87.6% (many diffs)
3 human 90139 TSPAN18 tetraspanin 18 XM_011520459.3 91.1% 87.6% (many diffs)
4 human 90139 TSPAN18 tetraspanin 18 XM_005253217.3 87.9% 84.5% (many diffs)
5 human 90139 TSPAN18 tetraspanin 18 XM_006718372.3 87.9% 84.5% (many diffs)
6 human 90139 TSPAN18 tetraspanin 18 XM_017018531.1 66.9% 63.4% (many diffs)
7 human 90139 TSPAN18 tetraspanin 18 XM_017018530.1 64.5% 61.1% (many diffs)
8 mouse 241556 Tspan18 tetraspanin 18 NM_183180.2 79.8% 79.8% (many diffs)
9 mouse 241556 Tspan18 tetraspanin 18 XM_006499474.3 79.8% 79.8% (many diffs)
10 mouse 241556 Tspan18 tetraspanin 18 XM_006499475.3 79.8% 79.8% (many diffs)
11 mouse 241556 Tspan18 tetraspanin 18 XM_006499476.3 79.8% 79.8% (many diffs)
12 mouse 241556 Tspan18 tetraspanin 18 XM_006499477.3 79.8% 79.8% (many diffs)
13 mouse 241556 Tspan18 tetraspanin 18 XM_011239525.2 79.8% 79.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
867
ORF length:
801
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA AGGCGACTGT CTGAGCTGCA TGAAGTATCT GATGTTTGTA TTCAATTTCT
121TCATATTTCT GGGCGGGGCC TGCCTGCTGG CCATCGGCAT CTGGGTCATG GTGGACCCCA
181CCGGCTTCCG GGAGATCGTG GCTGCCAATC CTCTGCTCCT CACGGGCGCC TACATCCTCC
241TGGCCATGGG GGGCCTGCTC TTTCTGCTCG GCTTCCTGGG CTGCTGCGGG GCCGTCCGTG
301AGAACAAGTG TCTGCTGCTA TTTTTCTTCC TGTTCATCCT GATCATCTTC CTGGCAGAGC
361TCTCAGCAGC CATCCTGGCC TTCATCTTCA GGGAAAATCT CACCCGAGAA TTCTTCACCA
421AGGAGCTCAC CAAGCACTAC CAGGGCAATA ACGACACAGA CGTCTTCTCT GCCACCTGGA
481ACTCGGTCAT GATCACATTT GGTTGCTGCG GGGTCAACGG GCCTGAAGAC TTTAAGTTTG
541CATCTGTGTT TCGACTCCTG ACCCTGGATA GTGAAGAGGT GCCGGAGGCC TGCTGCCGGA
601GGGAACCCCA AAGTCGGGAC GGGGTCCTGC TGAGCCGGGA GGAGTGCCTC CTGGGAAGGA
661GCCTATTCCT AAACAAGCAG GGCTGTTACA CGGTGATCCT CAACACCTTC GAGACCTACG
721TCTACTTGGC CGGAGCCCTT GCCATCGGGG TACTGGCCAT CGAGGAAGAA AGAGCTCATT
781CTGTCTCACA AGCCACCGGC ATCCTGTATC AGCTTCCAGC CTCCCCTCAG GCTTTCCAGT
841CACCAGGGAC ACTCGGAGCC ACAGCCTACC CAACTTTCTT GTACAAAGTt ggcattataa
901gaaagcattg cttatcaatt tgttgcaacg aac

Download FASTA (ORF) (Full)