Construct: ORF ccsbBroadEn_12943
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017655.1_s300c1, BRDN0000456707
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- STARD13 (90627)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 90627 | STARD13 | StAR related lipid transfer... | NM_001243466.2 | 99.9% | 100% | 1134A>G |
| 2 | human | 90627 | STARD13 | StAR related lipid transfer... | NM_001243474.1 | 76.2% | 76.1% | (many diffs) |
| 3 | human | 90627 | STARD13 | StAR related lipid transfer... | NM_178007.3 | 62.1% | 62% | 1134A>G;2060T>A;2062_3315del |
| 4 | human | 90627 | STARD13 | StAR related lipid transfer... | NM_178006.4 | 59.7% | 57.7% | (many diffs) |
| 5 | human | 90627 | STARD13 | StAR related lipid transfer... | XM_017020834.2 | 59.1% | 57.9% | (many diffs) |
| 6 | human | 90627 | STARD13 | StAR related lipid transfer... | NM_001243476.3 | 59% | 58% | (many diffs) |
| 7 | human | 90627 | STARD13 | StAR related lipid transfer... | XM_011535299.3 | 59% | 58% | (many diffs) |
| 8 | human | 90627 | STARD13 | StAR related lipid transfer... | XM_017020835.2 | 59% | 58% | (many diffs) |
| 9 | human | 90627 | STARD13 | StAR related lipid transfer... | XM_024449429.1 | 59% | 58% | (many diffs) |
| 10 | human | 90627 | STARD13 | StAR related lipid transfer... | NM_052851.3 | 52.1% | 52.1% | (many diffs) |
| 11 | mouse | 243362 | Stard13 | StAR-related lipid transfer... | XM_006504921.2 | 43% | 44% | (many diffs) |
| 12 | mouse | 243362 | Stard13 | StAR-related lipid transfer... | XM_006504922.3 | 43% | 44% | (many diffs) |
| 13 | mouse | 243362 | Stard13 | StAR-related lipid transfer... | XM_006504923.3 | 43% | 44% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2130
- ORF length:
- 2061
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GCTGGAACCC TCCTCAGTTC TCCATGCAAA CGTTAACCAG GCCCCTTTGT 121 GGTGCTTGGT GCTGCGCTGG TGCAGAGAAT GCAAAGACAC TGTCTGTGGT GGGAAACAGA 181 AAAGCAGAGT GAACCACACA TTCCAGCGCC GGGAAATTGA GGCAAAAGAA GCATGTGACT 241 GGCTCCGTGC TGCCGGGTTC CCGCAATACG CTCAGTTATA TGAGGATTCA CAATTTCCCA 301 TCAACATTGT GGCTGTCAAG AATGATCATG ATTTTCTTGA AAAGGACCTT GTAGAACCTC 361 TTTGCAGACG ACTAAATACG TTGAACAAGT GTGCCTCAAT GAAACTTGAT GTGAACTTCC 421 AAAGGAAAAA GGGTGACGAC TCCGATGAGG AAGATCTTTG TATCAGCAAC AAATGGACTT 481 TCCAAAGAAC CAGTCGCAGG TGGTCTCGTG TGGACGACCT CTACACGCTG CTCCCTCGAG 541 GAGACAGAAA TGGGTCACCG GGAGGCACGG GGATGAGGAA CACGACCAGC AGTGAGAGCG 601 TCCTCACAGA CCTGAGCGAG CCTGAGGTCT GCTCCATTCA CAGCGAAAGC AGTGGAGGCA 661 GCGACAGTCG CAGCCAGCCG GGCCAGTGCT GTACAGACAA CCCGGTCATG CTGGATGCCC 721 CACTCGTCAG CAGCAGCCTC CCACAGCCCC CCAGAGATGT CCTCAACCAC CCCTTCCACC 781 CCAAGAATGA GAAGCCCACG AGGGCTAGGG CCAAATCATT TTTGAAACGC ATGGAAACAC 841 TCCGAGGGAA GGGAGCCCAC GGGAGGCATA AGGGGTCTGG GCGGACAGGT GGCCTGGTGA 901 TCAGTGGGCC CATGTTGCAG CAGGAGCCAG AGTCCTTTAA GGCTATGCAG TGCATCCAAA 961 TACCAAATGG AGATCTCCAG AATTCGCCGC CACCTGCCTG CAGAAAAGGG CTCCCATGCT 1021 CTGGCAAGTC GAGTGGCGAG AGCAGCCCGT CGGAGCACAG CAGCAGCGGG GTGAGCACGC 1081 CCTGCCTGAA GGAACGCAAG TGCCACGAGG CCAACAAGCG CGGGGGCATG TACTTGGAGG 1141 ACCTAGATGT GCTGGCGGGG ACAGCACTGC CGGATGCAGG GGACCAAAGC CGTATGCATG 1201 AGTTTCACTC CCAAGAGAAT TTGGTGGTGC ATATTCCCAA GGATCACAAA CCAGGAACAT 1261 TCCCCAAGGC ACTTTCTATT GAAAGCCTCT CTCCCACAGA TAGTAGCAAT GGGGTTAATT 1321 GGAGGACCGG TAGCATCTCC CTGGGCAGAG AGCAGGTCCC TGGTGCCAGG GAGCCCCGGC 1381 TCATGGCGTC CTGCCACAGA GCCAGCCGAG TCAGTATCTA TGACAATGTC CCTGGCTCCC 1441 ATCTGTATGC CAGCACAGGA GATCTTTTGG ACTTGGAGAA AGATGACCTT TTCCCTCACT 1501 TGGATGACAT TCTGCAGCAT GTCAATGGGC TCCAAGAGGT AGTCGATGAC TGGTCCAAAG 1561 ATGTCTTGCC TGAACTGCAA ACTCATGATA CATTGGTTGG GGAACCTGGC TTATCCACCT 1621 TTCCATCTCC TAATCAGATC ACCTTAGATT TTGAAGGTAA CTCTGTCTCA GAAGGTCGGA 1681 CGACACCCAG TGATGTGGAA AGAGATGTAA CATCTCTTAA TGAATCTGAG CCTCCTGGGG 1741 TCAGAGACAG GAGGGATTCT GGTGTAGGGG CCTCTCTGAC CAGGCCAAAC AGGCGACTCC 1801 GATGGAACAG TTTCCAGCTG TCGCACCAGC CCCGGCCGGC CCCAGCATCG CCCCACATCA 1861 GCAGCCAGAC GGCCAGCCAG CTGAGCCTGC TCCAGCGCTT CTCACTGCTC CGCCTCACGG 1921 CCATCATGGA GAAGCACTCC ATGTCCAACA AGCACGGCTG GACATGGTCA GTTCCAAAGT 1981 TCATGAAGAG GATGAAAGTT CCCGACTACA AAGACAAGGC TGTCTTTGGC GTTCCTCTCA 2041 TAGTCCACGT CCAAAGAACG GGACAGCCCC TGCCTCAAAG TATTCAGCAA GCACTGAGAT 2101 ATCTACGCAG CAACTGCCTC GATCAGGAGT TGCCAACTTT CTTGTACAAA GTTGGcatta 2161 taagaaagca ttgcttatca atttgttgca acgaac