Construct: ORF ccsbBroadEn_12956

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012484.1_s300c1, BRDN0000395211
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
IGFN1 (91156)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 91156 IGFN1 immunoglobulin like and fib... NM_001367841.1 68.1% 67.6% (many diffs)
2 human 91156 IGFN1 immunoglobulin like and fib... XM_017002787.1 23.9% 23.9% (many diffs)
3 human 91156 IGFN1 immunoglobulin like and fib... NM_001164586.2 23.3% 23.3% (many diffs)
4 human 91156 IGFN1 immunoglobulin like and fib... XM_011510120.3 23.3% 23.3% (many diffs)
5 human 91156 IGFN1 immunoglobulin like and fib... XM_011510121.3 23.3% 23.3% (many diffs)
6 human 91156 IGFN1 immunoglobulin like and fib... XM_005245580.3 22.7% 22.7% (many diffs)
7 human 91156 IGFN1 immunoglobulin like and fib... XR_921994.2 19.7% (many diffs)
8 human 91156 IGFN1 immunoglobulin like and fib... XM_006711618.3 16.3% 15.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2673
ORF length:
2604
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGGGTGGCAG CCTATGGGAG AGAACTGGGG GTGCCTGGAG GAGATGCTGA
121ATGAAGATCA GAGCCGGGAG CCCCCTGGTC ACCTTGGTAG CAGGAGAAGT GGCAAAGACG
181GCAGGTTGGA CATCTATGGA GAGAGGAGAG ATGCTACCCG GAGTTCCACA TCCAGATACA
241AGCCTGGCAC TGGCAGTTTC TCCAAGGATG CCCAAGGCCC CATGGGCCAC TTCTCCCAGG
301GCCTGGCTGA CATGGAAGTG CAGCCGGGGG AGGCCGCCAC ACTCTCCTGT ACCCTCACCA
361GTGACCTGGG ACCTGGCACC TGGTTTAAGG ATGGCGTCAA GCTCACCACC CAGGATGGAG
421TCATCTTTAA GCAAGACGGT CTCGTGCACA GCCTCTTCAT CACGCATGTG CAGGGGACCC
481AAGCTGGGAG GTACACCTTT GTAGCTGGTG ACCAGCAGAG CGAGGCCACC CTGACCGTCC
541AGGATTCCCC TACCATTGCT CCAGATGTGA CAGAGAAACT GAGAGAGCCA CTGGTGGTCA
601AGGCTGGGAA GCCGGTGATA GTGAAGATCC CCTTCCAGAG CCACCTCCCC ATTCAGGCTG
661CCTGGAGGAA GGACGGGGCT GAGGTGGTGG GCAGCAGTGA CAGGGAGGCC CAGGTGGACC
721TGGGGGATGG CTACACGCGG CTGTGCCTCC CCAGCGCAGG CAGGAAGGAC TGTGGCCAGT
781ACAGCGTGAC ACTGAGGAGT GAGGGAGGCT CTGTGCAGGC CGAGCTCACT CTGCAAGTCA
841TAGACAAGCC TGATCCCCCA CAAGGCCCCA TGGAGGTTCA GGATTGCCAT AGGGCTGGCG
901TCTGCCTCCG CTGGCGGCCC CCAAGGGACA ATGGGGGCCG GACTGTAGAG TGCTACGTGG
961TGGAGAGACG GCAGGCTGGC AGGAGCACTT GGCTGAAGGT GGGCGAGGCC CCCGCTGACA
1021GCACCACCTT CACGGATGCC CATGTGGAGC CAGGCAGGAA GTATACCTTC CGAGTGCGGG
1081CTGTGACCTC AGAGGGGGCT GGCGAGGCCC TGGAGTCTGA GGAGATATTG GTGGCTCCTG
1141AGGCTCTCCC CAAGGCCCCT TCCGCGCCAG CCATCCTGTC GGCCTCCAGC CAGGGCATCA
1201CACTGACATG GACAGCACCT CGGGGCCCCG GCAGCGCCCA CATCCTGGGC TACCTGATCG
1261AGAGGCGTAA GAAGGGGAGC AACACCTGGA CGGCAGTGAA CGACCAGCCG GTGCCTGAGA
1321GGAGGTGGAC GGTGGCGGAC GTGCGGCAGG GCTGTCAGTA TGAGTTCCGG GTCACAGCTG
1381TGGCTCCCTC AGGTCCCGGA GAGCCTGGAC CTCCATCGGA TGCCGTCTTT GCTCGGGACC
1441CCATGAGACC CCCTGGGCTG GTGAGGAATC TCCAAGTCAC AGACAGATCG AACACCAGCA
1501TCACTCTGAG CTGGGCTGGG CCAGACACCC AGGAAGGGGA TGAAGCCCAG GGGTATGTGG
1561TGGAGCTGTG CAGCTCAGAC AGTCTCCAGT GGCTCCCGTG CCATGTAGGC ACCGTGCCAG
1621TCACCACCTA CACGGCCAAG GGGCTTCGGC CTGGAGAGGG CTACTTCGTG CGGGTGACAG
1681CAGTTAATGA AGGAGGCCAG AGCCAGCCCA GTGCCCTGGA CACATTAGTG CAAGCCATGC
1741CTGTTACTGT CTGTCCCAAG TTCCTCGTGG ACTCCAGCAC CAAGGACTTG CTGACAGTCA
1801AGGTCGGGGA CACAGTTCGT GTGCCCGTCT CCTTTGAAGC CATGCCCATG CCTGAGGTGA
1861CCTGGCTGAA GGATGGCTTG CCCTTGCCCA AAAGAAGTGT GACTGTCACT AAGGATGGCC
1921TCACCCAGCT TCTGATCCCT GTGGCTGGAC TCTCAGACAG TGGTCTCTAC ACTGTGGTGC
1981TGAGGACCCT GCAGGGGAAG GAGGTTGCCC ACAGCTTCCG TATCAGGGTG GCAGCATGCC
2041CGCAGGCCCC TGGGCCCATC CACCTGCAGG AGAACGTGCC TGGGACGGTG ACGGCCGAGT
2101GGGAACCCTC TCCTGACGAG GCCCAGGATG TCCCGCTGCA CTACGCGGTG TTCACACGCT
2161CCTCAGCGCA CGGTCCCTGG CACGAGGCAG CCGACCGCAT CTACACCAAC CGCTTCACCC
2221TCCTGGGCAT CCTCCCCGGC CACGAATACC ACTTCAGGGT GGTGGCCAAG AATGAGCTGG
2281GGGCCAGCAA ACCCTCGGAC ACCAGCCAGC CCTGGTGCAT CCCCCGGCAG CGCGACAGGT
2341TCACAGTGAA GGCTCCGTGC TACCGGGAGC CCGACCTGAG CCAGAAGCCC CGGTTCCTGG
2401TGGGCCTGCG GTCCCACCTG CTGCCCCAGG GCTGCGAGTG CTGCATGAGC TGTGCCGTGC
2461AGGGCTCGCC CCGGCCCCAC GTCACCTGGT TCAAGAATGA CCGCAGCCTG GAAGGAAACC
2521CCGCGGTGTA CAGCACTGAC CTGCTGGGCG TGTGCTCCCT CACCATCCCC AGCGTATCCC
2581CGAAGGACAG CGGGGAGTAC AAGGCTGTGG CTGAGAACAC GCTGGGCCAG GCAGTCAGCA
2641CTGCCACCCT CATTGTCATA GAACCCAGCA CCTTGCCAAC TTTCTTGTAC AAAGTtggca
2701ttataagaaa gcattgctta tcaatttgtt gcaacgaac

Download FASTA (ORF) (Full)