Construct: ORF ccsbBroadEn_13009
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009320.1_s300c1, BRDN0000398545
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TBC1D27P (96597)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 254272 | TBC1D28 | TBC1 domain family member 28 | NM_001039397.2 | 11.9% | 10.9% | (many diffs) |
| 2 | human | 353149 | TBC1D26 | TBC1 domain family member 26 | NM_178571.4 | 9.7% | 8.4% | (many diffs) |
| 3 | human | 254272 | TBC1D28 | TBC1 domain family member 28 | XM_011523781.2 | 8% | 7.4% | (many diffs) |
| 4 | human | 254272 | TBC1D28 | TBC1 domain family member 28 | XM_024450684.1 | 8% | 7.4% | (many diffs) |
| 5 | human | 96597 | TBC1D27P | TBC1 domain family member 2... | NR_147084.1 | 2.3% | 1_268del;350_3421del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 150
- ORF length:
- 81