Transcript: Human NM_178571.4

Homo sapiens TBC1 domain family member 26 (TBC1D26), mRNA.

Source:
NCBI, updated 2019-05-04
Taxon:
Homo sapiens (human)
Gene:
TBC1D26 (353149)
Length:
1883
CDS:
251..1003

Additional Resources:

NCBI RefSeq record:
NM_178571.4
NBCI Gene record:
TBC1D26 (353149)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_178571.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000118516 GTGGTATTCTACAGCCCAAAT pLKO.1 913 CDS 100% 10.800 15.120 N TBC1D26 n/a
2 TRCN0000440427 AGATGCTTTCTGGGCGCTTAC pLKO_005 862 CDS 100% 6.000 4.200 N TBC1D26 n/a
3 TRCN0000443267 ATGCACACCCAAGTCAGAAGG pLKO_005 1427 3UTR 100% 4.050 2.835 N TBC1D26 n/a
4 TRCN0000433768 TGAATCCTGGATGTCACCTTC pLKO_005 1454 3UTR 100% 4.050 2.835 N TBC1D26 n/a
5 TRCN0000118513 TGTGGTATTCTACAGCCCAAA pLKO.1 912 CDS 100% 4.050 2.835 N TBC1D26 n/a
6 TRCN0000118512 CGGTGTTTCCTTGATGGGAAA pLKO.1 1060 3UTR 100% 0.405 0.284 N TBC1D26 n/a
7 TRCN0000118514 CGTGGCCTATTCTGCATATAA pLKO.1 772 CDS 100% 15.000 7.500 Y TBC1D26 n/a
8 TRCN0000118515 CCCAGGCAAATATAAGGTCAT pLKO.1 622 CDS 100% 4.050 2.025 Y TBC1D26 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_178571.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_10062 pDONR223 100% 99.7% 99.2% None 617C>T;700G>A n/a
2 ccsbBroad304_10062 pLX_304 0% 99.7% 99.2% V5 617C>T;700G>A n/a
3 TRCN0000471493 CACCGGATCCAACTCAATTTTTTG pLX_317 58.4% 99.7% 99.2% V5 617C>T;700G>A n/a
4 ccsbBroadEn_09898 pDONR223 100% 79.2% 73.6% None (many diffs) n/a
5 ccsbBroad304_09898 pLX_304 0% 79.2% 73.6% V5 (many diffs) n/a
6 TRCN0000477885 TTTCCCCCCGACATGCCATGGAAT pLX_317 50.5% 79.2% 73.6% V5 (many diffs) n/a
7 ccsbBroadEn_13009 pDONR223 100% 9.7% 8.4% None (many diffs) n/a
8 ccsbBroad304_13009 pLX_304 0% 9.7% 8.4% V5 (many diffs) n/a
9 TRCN0000476936 CGGTACTGGGGTTGGAATGCGCAC pLX_317 100% 9.7% 8.4% V5 (many diffs) n/a
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