Construct: ORF ccsbBroadEn_13033
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006257.1_s300c1, BRDN0000390191
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC22A9 (114571)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 114571 | SLC22A9 | solute carrier family 22 me... | XM_017017159.2 | 53.4% | 41.4% | 507_661del;870_1335del |
| 2 | human | 114571 | SLC22A9 | solute carrier family 22 me... | NM_080866.3 | 43% | 33.4% | 507_661del;870_1659del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 780
- ORF length:
- 714
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC CTTTCAGGAC CTCCTGGGTC ACGCTGGTGA CCTGTGGAGA TTCCAGATCC 121 TTCAGACTGT TTTTCTCTCA ATCTTTGCTG TTGCTACATA CCTTCATTTT ATGCTGGAGA 181 ACTTCACTGC ATTCATACCT GGCCATCGCT GCTGGGTCCA CATCCTGGAC AATGACACTG 241 TCTCTGACAA TGACACTGGG GCCCTCAGCC AAGATGCACT CTTGAGAATC TCCATCCCAC 301 TGGACTCAAA CATGAGGCCA GAGAAGTGTC GTCGCTTTGT TCATCCTCAG TGGCAGCTCC 361 TTCACCTGAA TGGGACCTTC CCCAACACAA GTGACGCAGA CATGGAGCCC TGTGTGGATG 421 GCTGGGTGTA TGACAGAATC TCCTTCTCAT CCACCATCGT GACTGAGTGG GATCTGGTAT 481 GTGACTCTCA ATCACTGACT TCAGTGGCTA AATTTGTATT CATGGCTGGA ATGATGGTGG 541 GAGGCATCCT AGGCGGTCAT TTATCAGACA GTAGCCGAGT GGGCAACACA CAGATTCCAG 601 GCCATGGGAA TTACATTGGG AATGTGCCCT TCTGGTATTG CATTTATGAC CCTGGCAGGC 661 CTGGCTTTTG CCATTCGAGA CTGGCATATC CTCCAGCTGG TGGTGTCTGT ACCATACTTT 721 GTGATCTTTC TGACCTCAAG TTGGCTGCTA GAGTCTGCTC GGTGGCTCAT TATCAACAAT 781 ACCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca 841 acgaac