Transcript: Human XM_017017159.2

PREDICTED: Homo sapiens solute carrier family 22 member 9 (SLC22A9), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SLC22A9 (114571)
Length:
2639
CDS:
1187..2524

Additional Resources:

NCBI RefSeq record:
XM_017017159.2
NBCI Gene record:
SLC22A9 (114571)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017017159.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000043457 CTACGCTTCTTGTCTGGGATT pLKO.1 1790 CDS 100% 4.050 5.670 N SLC22A9 n/a
2 TRCN0000424932 GCAATGAGCCTCATAACAAAT pLKO_005 1814 CDS 100% 13.200 10.560 N SLC22A9 n/a
3 TRCN0000431717 TGCCCTTCTGGTATTGCATTT pLKO_005 1901 CDS 100% 10.800 8.640 N SLC22A9 n/a
4 TRCN0000043456 CCTCCTGTCCTTTACGAGATT pLKO.1 2242 CDS 100% 4.950 3.960 N SLC22A9 n/a
5 TRCN0000043454 GCCAAGATGCACTCTTGAGAA pLKO.1 1389 CDS 100% 0.495 0.347 N SLC22A9 n/a
6 TRCN0000043455 GCCATCATATTTGTGCCACAA pLKO.1 2453 CDS 100% 4.050 2.430 N SLC22A9 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017017159.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04657 pDONR223 100% 80.4% 77.1% None 1288_1289ins313;1335_1336insTGACGCAGTTT n/a
2 ccsbBroad304_04657 pLX_304 0% 80.4% 77.1% V5 1288_1289ins313;1335_1336insTGACGCAGTTT n/a
3 ccsbBroadEn_13033 pDONR223 100% 53.4% 41.4% None 507_661del;870_1335del n/a
4 ccsbBroad304_13033 pLX_304 0% 53.4% 41.4% V5 507_661del;870_1335del n/a
5 TRCN0000475411 ACTTGCTTGTCACAGCGCGCGGAC pLX_317 57.6% 53.4% 41.4% V5 507_661del;870_1335del n/a
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