Construct: ORF ccsbBroadEn_13067
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006607.1_s300c1, BRDN0000387271
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ANTXR2 (118429)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 118429 | ANTXR2 | ANTXR cell adhesion molecule 2 | NM_001286780.2 | 36.9% | 36.7% | 1_777del;838G>C |
| 2 | human | 118429 | ANTXR2 | ANTXR cell adhesion molecule 2 | NM_001286781.2 | 36.9% | 36.7% | 1_777del;838G>C |
| 3 | human | 118429 | ANTXR2 | ANTXR cell adhesion molecule 2 | XM_011531587.3 | 34.3% | 34% | (many diffs) |
| 4 | human | 118429 | ANTXR2 | ANTXR cell adhesion molecule 2 | NM_058172.6 | 31% | 30.9% | 1_1008del;1069G>C |
| 5 | human | 118429 | ANTXR2 | ANTXR cell adhesion molecule 2 | NM_001145794.1 | 28.9% | 28.7% | (many diffs) |
| 6 | mouse | 71914 | Antxr2 | anthrax toxin receptor 2 | NM_133738.1 | 26.5% | 27.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 522
- ORF length:
- 456
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTG GTGGTTTTGG CCCCTTTGCT GCAAAGTGGT TATTAAGGAT CCTCCACCAC 121 CACCCCCCCC TGCACCAAAA GAGGAGGAAG AAGAACCTTT GCCTACTAAA AAGTGGCCAA 181 CTGTGGATGC TTCCTATTAT GGTGGTCGAG GGGTTGGAGG AATTAAAAGA ATGGAGGTTC 241 GTTGGGGTGA TAAAGGATCT ACTGAGGAAG GTGCAAGGCT AGAGAAAGCC AAAAATGCTG 301 TGGTGAAGAT TCCTGAAGAA ACAGAGGAAC CCATCAGGCC TAGACCACCT CGACCCAAAC 361 CCACACACCA GCCTCCTCAG ACAAAATGGT ACACCCCAAT TAAGGGTCGT CTTGATGCTC 421 TCTGGGCTTT GTTGAGGCGG CAGTATGACC GGGTTTCTTT GATGCGACCT CAGGAAGGAG 481 ATGAGGGCCG GTGCATAAAC TTCTCCCGAG TTCCATCTCA GTACCCAACT TTCTTGTACA 541 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac