Construct: ORF ccsbBroadEn_13155

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011214.1_s300c1, BRDN0000397099
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LYPD6B (130576)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 130576 LYPD6B LY6/PLAUR domain containing 6B NM_001317006.1 82.8% 79.8% 406delA;422_507del
2 human 130576 LYPD6B LY6/PLAUR domain containing 6B XM_011510625.1 82.8% 79.8% 406delA;422_507del
3 human 130576 LYPD6B LY6/PLAUR domain containing 6B NM_001317003.1 76.5% 73.7% 1_42del;448delA;464_549del
4 human 130576 LYPD6B LY6/PLAUR domain containing 6B NM_001317004.1 76.5% 73.7% 1_42del;448delA;464_549del
5 human 130576 LYPD6B LY6/PLAUR domain containing 6B NM_001317005.1 76.5% 73.7% 1_42del;448delA;464_549del
6 human 130576 LYPD6B LY6/PLAUR domain containing 6B XM_006712281.4 76.5% 73.7% 1_42del;448delA;464_549del
7 human 130576 LYPD6B LY6/PLAUR domain containing 6B XM_011510623.2 76.5% 73.7% 1_42del;448delA;464_549del
8 human 130576 LYPD6B LY6/PLAUR domain containing 6B XM_017003365.1 76.5% 73.7% 1_42del;448delA;464_549del
9 human 130576 LYPD6B LY6/PLAUR domain containing 6B XM_017003366.1 76.5% 73.7% 1_42del;448delA;464_549del
10 human 130576 LYPD6B LY6/PLAUR domain containing 6B XM_006712280.3 73.6% 71% 1_63del;469delA;485_570del
11 human 130576 LYPD6B LY6/PLAUR domain containing 6B XM_005246306.4 70% 67.5% 1_93del;499delA;515_600del
12 human 130576 LYPD6B LY6/PLAUR domain containing 6B XM_006712279.2 70% 67.5% 1_93del;499delA;515_600del
13 human 130576 LYPD6B LY6/PLAUR domain containing 6B NM_001317002.1 67.6% 65.2% 1_114del;520delA;536_621del
14 human 130576 LYPD6B LY6/PLAUR domain containing 6B NM_177964.5 67.6% 65.2% 1_114del;520delA;536_621del
15 human 130576 LYPD6B LY6/PLAUR domain containing 6B XM_017003364.1 67.6% 65.2% 1_114del;520delA;536_621del
16 human 130576 LYPD6B LY6/PLAUR domain containing 6B XM_011510620.2 64.2% 61.9% 1_147del;553delA;569_654del
17 mouse 71897 Lypd6b LY6/PLAUR domain containing 6B XM_006498355.3 70.3% 70.9% (many diffs)
18 mouse 71897 Lypd6b LY6/PLAUR domain containing 6B XM_006498356.3 70.3% 70.9% (many diffs)
19 mouse 71897 Lypd6b LY6/PLAUR domain containing 6B XM_006498357.3 70.3% 70.9% (many diffs)
20 mouse 71897 Lypd6b LY6/PLAUR domain containing 6B XM_006498358.3 70.3% 70.9% (many diffs)
21 mouse 71897 Lypd6b LY6/PLAUR domain containing 6B XM_006498359.3 70.3% 70.9% (many diffs)
22 mouse 71897 Lypd6b LY6/PLAUR domain containing 6B NM_027990.3 63.3% 63.8% (many diffs)
23 mouse 71897 Lypd6b LY6/PLAUR domain containing 6B XM_006498350.3 63.3% 63.8% (many diffs)
24 mouse 71897 Lypd6b LY6/PLAUR domain containing 6B XM_006498351.3 63.3% 63.8% (many diffs)
25 mouse 71897 Lypd6b LY6/PLAUR domain containing 6B XM_006498352.3 63.3% 63.8% (many diffs)
26 mouse 71897 Lypd6b LY6/PLAUR domain containing 6B XM_006498353.3 63.3% 63.8% (many diffs)
27 mouse 71897 Lypd6b LY6/PLAUR domain containing 6B XM_006498354.3 63.3% 63.8% (many diffs)
28 mouse 71897 Lypd6b LY6/PLAUR domain containing 6B XM_017319267.1 63.3% 63.8% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
486
ORF length:
420
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCT GCTCCTCTGT CACGCTCTCG CTATAGCTGT TGTCCAGATC GTTATCTTCT
121CAGAAAGCTG GGCATTTGCC AAGAACATCA ACTTCTATAA TGTGAGGCCT CCTCTCGACC
181CTACACCATT TCCAAATAGC TTCAAGTGCT TTACTTGTGA AAACGCAGGG GATAATTATA
241ACTGCAATCG ATGGGCAGAA GACAAATGGT GTCCACAAAA TACACAGTAC TGTTTGACAG
301TTCATCACTT CACCAGCCAC GGAAGAAGCA CATCCATCAC CAAAAAGTGT GCCTCCAGAA
361GTGAATGTCA TTTTGTCGGT TGCCACCACA GCCGAGATTC TGAACATACG GAGTGTAGGT
421CTTGCTGTGA AGGAATGATC TGCAATGTAG AATTACCCAC CAATCACACT ATGCAGTGTT
481TGCCGTACCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt
541gttgcaacga ac

Download FASTA (ORF) (Full)