Construct: ORF ccsbBroadEn_13155
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011214.1_s300c1, BRDN0000397099
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LYPD6B (130576)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 130576 | LYPD6B | LY6/PLAUR domain containing 6B | NM_001317006.1 | 82.8% | 79.8% | 406delA;422_507del |
| 2 | human | 130576 | LYPD6B | LY6/PLAUR domain containing 6B | XM_011510625.1 | 82.8% | 79.8% | 406delA;422_507del |
| 3 | human | 130576 | LYPD6B | LY6/PLAUR domain containing 6B | NM_001317003.1 | 76.5% | 73.7% | 1_42del;448delA;464_549del |
| 4 | human | 130576 | LYPD6B | LY6/PLAUR domain containing 6B | NM_001317004.1 | 76.5% | 73.7% | 1_42del;448delA;464_549del |
| 5 | human | 130576 | LYPD6B | LY6/PLAUR domain containing 6B | NM_001317005.1 | 76.5% | 73.7% | 1_42del;448delA;464_549del |
| 6 | human | 130576 | LYPD6B | LY6/PLAUR domain containing 6B | XM_006712281.4 | 76.5% | 73.7% | 1_42del;448delA;464_549del |
| 7 | human | 130576 | LYPD6B | LY6/PLAUR domain containing 6B | XM_011510623.2 | 76.5% | 73.7% | 1_42del;448delA;464_549del |
| 8 | human | 130576 | LYPD6B | LY6/PLAUR domain containing 6B | XM_017003365.1 | 76.5% | 73.7% | 1_42del;448delA;464_549del |
| 9 | human | 130576 | LYPD6B | LY6/PLAUR domain containing 6B | XM_017003366.1 | 76.5% | 73.7% | 1_42del;448delA;464_549del |
| 10 | human | 130576 | LYPD6B | LY6/PLAUR domain containing 6B | XM_006712280.3 | 73.6% | 71% | 1_63del;469delA;485_570del |
| 11 | human | 130576 | LYPD6B | LY6/PLAUR domain containing 6B | XM_005246306.4 | 70% | 67.5% | 1_93del;499delA;515_600del |
| 12 | human | 130576 | LYPD6B | LY6/PLAUR domain containing 6B | XM_006712279.2 | 70% | 67.5% | 1_93del;499delA;515_600del |
| 13 | human | 130576 | LYPD6B | LY6/PLAUR domain containing 6B | NM_001317002.1 | 67.6% | 65.2% | 1_114del;520delA;536_621del |
| 14 | human | 130576 | LYPD6B | LY6/PLAUR domain containing 6B | NM_177964.5 | 67.6% | 65.2% | 1_114del;520delA;536_621del |
| 15 | human | 130576 | LYPD6B | LY6/PLAUR domain containing 6B | XM_017003364.1 | 67.6% | 65.2% | 1_114del;520delA;536_621del |
| 16 | human | 130576 | LYPD6B | LY6/PLAUR domain containing 6B | XM_011510620.2 | 64.2% | 61.9% | 1_147del;553delA;569_654del |
| 17 | mouse | 71897 | Lypd6b | LY6/PLAUR domain containing 6B | XM_006498355.3 | 70.3% | 70.9% | (many diffs) |
| 18 | mouse | 71897 | Lypd6b | LY6/PLAUR domain containing 6B | XM_006498356.3 | 70.3% | 70.9% | (many diffs) |
| 19 | mouse | 71897 | Lypd6b | LY6/PLAUR domain containing 6B | XM_006498357.3 | 70.3% | 70.9% | (many diffs) |
| 20 | mouse | 71897 | Lypd6b | LY6/PLAUR domain containing 6B | XM_006498358.3 | 70.3% | 70.9% | (many diffs) |
| 21 | mouse | 71897 | Lypd6b | LY6/PLAUR domain containing 6B | XM_006498359.3 | 70.3% | 70.9% | (many diffs) |
| 22 | mouse | 71897 | Lypd6b | LY6/PLAUR domain containing 6B | NM_027990.3 | 63.3% | 63.8% | (many diffs) |
| 23 | mouse | 71897 | Lypd6b | LY6/PLAUR domain containing 6B | XM_006498350.3 | 63.3% | 63.8% | (many diffs) |
| 24 | mouse | 71897 | Lypd6b | LY6/PLAUR domain containing 6B | XM_006498351.3 | 63.3% | 63.8% | (many diffs) |
| 25 | mouse | 71897 | Lypd6b | LY6/PLAUR domain containing 6B | XM_006498352.3 | 63.3% | 63.8% | (many diffs) |
| 26 | mouse | 71897 | Lypd6b | LY6/PLAUR domain containing 6B | XM_006498353.3 | 63.3% | 63.8% | (many diffs) |
| 27 | mouse | 71897 | Lypd6b | LY6/PLAUR domain containing 6B | XM_006498354.3 | 63.3% | 63.8% | (many diffs) |
| 28 | mouse | 71897 | Lypd6b | LY6/PLAUR domain containing 6B | XM_017319267.1 | 63.3% | 63.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 486
- ORF length:
- 420
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCT GCTCCTCTGT CACGCTCTCG CTATAGCTGT TGTCCAGATC GTTATCTTCT 121 CAGAAAGCTG GGCATTTGCC AAGAACATCA ACTTCTATAA TGTGAGGCCT CCTCTCGACC 181 CTACACCATT TCCAAATAGC TTCAAGTGCT TTACTTGTGA AAACGCAGGG GATAATTATA 241 ACTGCAATCG ATGGGCAGAA GACAAATGGT GTCCACAAAA TACACAGTAC TGTTTGACAG 301 TTCATCACTT CACCAGCCAC GGAAGAAGCA CATCCATCAC CAAAAAGTGT GCCTCCAGAA 361 GTGAATGTCA TTTTGTCGGT TGCCACCACA GCCGAGATTC TGAACATACG GAGTGTAGGT 421 CTTGCTGTGA AGGAATGATC TGCAATGTAG AATTACCCAC CAATCACACT ATGCAGTGTT 481 TGCCGTACCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt 541 gttgcaacga ac