Construct: ORF ccsbBroadEn_13160
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014571.1_s300c1, BRDN0000386087
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZDHHC19 (131540)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 131540 | ZDHHC19 | zinc finger DHHC-type conta... | NM_001039617.2 | 86.9% | 85.1% | (many diffs) |
| 2 | human | 131540 | ZDHHC19 | zinc finger DHHC-type conta... | XM_006713493.2 | 86.3% | 84.4% | (many diffs) |
| 3 | human | 131540 | ZDHHC19 | zinc finger DHHC-type conta... | XM_005269279.3 | 81.6% | 81.2% | (many diffs) |
| 4 | human | 131540 | ZDHHC19 | zinc finger DHHC-type conta... | XM_006713494.2 | 78.7% | 76.6% | (many diffs) |
| 5 | human | 131540 | ZDHHC19 | zinc finger DHHC-type conta... | XR_924100.1 | 67.8% | 1_122del;812_983del;1068_1069ins72 | |
| 6 | human | 131540 | ZDHHC19 | zinc finger DHHC-type conta... | NR_135618.2 | 66.5% | 1_85del;932_1271del | |
| 7 | human | 131540 | ZDHHC19 | zinc finger DHHC-type conta... | XM_011512417.1 | 63.4% | 57.9% | (many diffs) |
| 8 | human | 131540 | ZDHHC19 | zinc finger DHHC-type conta... | XR_001740012.1 | 60.9% | 1_122del;969_1389del | |
| 9 | human | 131540 | ZDHHC19 | zinc finger DHHC-type conta... | XR_001740013.1 | 60.5% | 1_122del;807_808insAGTGC;964_1384del | |
| 10 | human | 131540 | ZDHHC19 | zinc finger DHHC-type conta... | XR_246038.2 | 59.5% | (many diffs) | |
| 11 | human | 131540 | ZDHHC19 | zinc finger DHHC-type conta... | XR_924098.1 | 58% | 1_122del;896_964del;1038_1458del | |
| 12 | human | 131540 | ZDHHC19 | zinc finger DHHC-type conta... | XR_001740011.1 | 57.6% | (many diffs) | |
| 13 | human | 131540 | ZDHHC19 | zinc finger DHHC-type conta... | NR_135617.2 | 54.6% | (many diffs) | |
| 14 | human | 131540 | ZDHHC19 | zinc finger DHHC-type conta... | XR_002959490.1 | 48.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 912
- ORF length:
- 846
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAC ACTCTTAACG GATGCCACGC CGCTGGTGAA GGAGCCCCAT CCCCTGCCTC 121 TGGTCCCACG TCCCTGGTTC CTCCCTAGCC TCTTTGCTGC CTTCAATGTG GTGCTGCTGG 181 TCTTTTTCAG TGGCCTCTTC TTCGCATTCC CTTGCAGGTG GCTGGCTCAG AACGGGGAGT 241 GGGCCTTTCC TGTTATCACA GGCTCCCTCT TTGTCCTTAC CTTCTTCAGT CTTGTTTCAC 301 TCAACTTCTC AGACCCTGGC ATCTTACATC AAGGCTCCGC TGAGCAGGGC CCCTTGACGG 361 TGCACGTGGT GTGGGTGAAC CACGGGGCCT TCCGCCTGCA ATGGTGTCCA AAGTGCTGCT 421 TCCACCGCCC GCCCCGGACT TACCACTGCC CCTGGTGCAA CATCTGTGTG GAGGACTTTG 481 ACCACCACTG CAAGTGGGTC AATAACTGCA TCGGTCACCG CAACTTCCGC TTCTTCATGC 541 TGCTTGTCCT GTCCCTGTGC CTCTACTCGG GCGCCATGCT GGTCACCTGT CTCATCTTCC 601 TGGTGCGCAC AACCCACCTG CCCTTCTCCA CCGACAAGGC CATCGCCATC GTGGTGGCCG 661 TGTCCGCCGC GGGCCTCCTG GTGCCGCTGT CCCTCCTGCT GCTGATCCAG GCACTGTCCG 721 TGAGCTCGGC CGACCGCACC TACAAGGGCA AGTGCAGACA CCTTCAGGGA TACAACCCCT 781 TCGACCAGGG CTGTGCCAGC AACTGGTATT TAACAATTTG TGCACCACTG GGACCCAAGG 841 CTGCTGCATC CTGGATGAGG CTGGCCTCAG CTTCCTGCAG AGCTAAGCCC TGGGCCGTGT 901 GCTTCCCAAG CTGCCCAACT TTCNTGTACA AAGTtggcat tataagaaag cattgcttat 961 caatttgttg caacgaac