Construct: ORF ccsbBroadEn_13174
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000195.1_s300c1, BRDN0000386969
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC9B2 (133308)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 133308 | SLC9B2 | solute carrier family 9 mem... | NM_001370201.1 | 96.6% | 96.6% | 1_54del |
| 2 | human | 133308 | SLC9B2 | solute carrier family 9 mem... | NM_001370202.1 | 96.6% | 96.6% | 1_54del |
| 3 | human | 133308 | SLC9B2 | solute carrier family 9 mem... | NM_178833.7 | 96.6% | 96.6% | 1_54del |
| 4 | human | 133308 | SLC9B2 | solute carrier family 9 mem... | NM_001300754.2 | 86% | 86% | 1_54del;269_270ins171 |
| 5 | human | 133308 | SLC9B2 | solute carrier family 9 mem... | NM_001370203.1 | 86% | 86% | 1_54del;269_270ins171 |
| 6 | human | 133308 | SLC9B2 | solute carrier family 9 mem... | NM_001370204.1 | 86% | 86% | 1_54del;269_270ins171 |
| 7 | human | 133308 | SLC9B2 | solute carrier family 9 mem... | NM_001370200.1 | 85.1% | 85.1% | 1_54del;583_584ins186 |
| 8 | human | 133308 | SLC9B2 | solute carrier family 9 mem... | NM_001370199.1 | 84.9% | 74.1% | 1_54del;1253_1254ins137;1422_1423ins52 |
| 9 | human | 133308 | SLC9B2 | solute carrier family 9 mem... | NM_001370206.1 | 84.9% | 74.1% | 1_54del;1253_1254ins137;1422_1423ins52 |
| 10 | human | 133308 | SLC9B2 | solute carrier family 9 mem... | NM_001370207.1 | 84.9% | 74.1% | 1_54del;1253_1254ins137;1422_1423ins52 |
| 11 | human | 133308 | SLC9B2 | solute carrier family 9 mem... | NM_001300756.2 | 74.3% | 63.9% | (many diffs) |
| 12 | human | 133308 | SLC9B2 | solute carrier family 9 mem... | NM_001370205.1 | 74.3% | 63.9% | (many diffs) |
| 13 | mouse | 97086 | Slc9b2 | solute carrier family 9, su... | XM_006502401.3 | 70.6% | 72.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1623
- ORF length:
- 1557
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA TTACACGCCC TCCATGCATC AAGAAGCACA GGAGGAGACA GTTATGAAGC 121 TCAAAGGTAT AGATGCAAAT GAACCAACAG AAGGAAGTAT TCTTTTGAAA AGCAGTGAAA 181 AAAAGCTACA AGAAACACCA ACTGAAGCAA ATCACGTACA AAGACTGAGA CAAATGCTGG 241 CTTGCCCTCC ACATGGTTTA CTGGACAGGG TCATAACAAA TGTTACCATC ATTGTTCTTC 301 TGTGGGCTGT AGTTTGGTCA ATTACTGGCA GTGAATGTCT TCCTGGAGGA AACCTATTTG 361 GAATTATAAT CCTATTCTAT TGTGCCATCA TTGGTGGTAA ACTTTTGGGG CTTATTAAGT 421 TACCTACATT GCCTCCACTG CCTTCTCTTC TTGGCATGCT GCTTGCAGGG TTTCTCATCA 481 GAAATATCCC AGTCATCAAC GATAATGTGC AGATCAAGCA CAAGTGGTCT TCCTCTTTGA 541 GAAGCATAGC CCTGTCTATC ATTCTGGTTC GTGCTGGCCT TGGTCTGGAT TCAAAGGCCC 601 TGAAGAAGTT AAAGGGCGTT TGTGTAAGAC TGTCCATGGG TCCCTGTATT GTGGAGGCGT 661 GCACATCTGC TCTTCTTGCC CATTACCTGC TGGGTTTACC ATGGCAATGG GGATTTATAC 721 TGGGTTTTGT TTTAGGTGCT GTATCTCCAG CTGTTGTGGT GCCTTCAATG CTCCTTTTGC 781 AGGGAGGAGG CTATGGTGTT GAGAAGGGTG TCCCAACCTT GCTCATGGCA GCTGGCAGCT 841 TCGATGACAT TCTGGCCATC ACTGGCTTCA ACACATGCTT GGGCATAGCC TTTTCCACAG 901 GCTCTACTGT CTTTAATGTC CTCAGAGGAG TTTTGGAGGT GGTAATTGGT GTGGCAACTG 961 GATCTGTTCT TGGATTTTTC ATTCAGTACT TTCCAAGCCG TGACCAGGAC AAACTTGTGT 1021 GTAAGAGAAC ATTCCTTGTG TTGGGGTTGT CTGTGCTAGC TGTGTTCAGC AGTGTGCATT 1081 TTGGTTTCCC TGGATCAGGA GGACTGTGCA CGTTGGTCAT GGCTTTCCTT GCAGGCATGG 1141 GATGGACCAG CGAAAAGGCA GAGGTTGAAA AGATAATTGC AGTTGCCTGG GACATTTTTC 1201 AGCCCCTTCT TTTTGGACTA ATTGGAGCAG AGGTATCTAT TGCATCTCTC AGACCAGAAA 1261 CTGTAGGCCT TTGTGTTGCC ACCGTAGGCA TTGCAGTATT GATACGAATT TTGACTACAT 1321 TTCTGATGGT GTGTTTTGCT GGTTTTAACT TAAAAGAAAA GATATTTATT TCTTTTGCAT 1381 GGCTTCCAAA GGCCACAGTT CAGGCTGCAA TAGGATCTGT GGCTTTGGAC ACAGCAAGGT 1441 CACATGGAGA GAAACAATTA GAAGACTATG GAATGGATGT GTTGACAGTG GCATTTTTGT 1501 CCATCCTCAT CACAGCCCCA ATTGGAAGTC TGCTTATTGG TTTACTGGGC CCCAGGCTTC 1561 TGCAGAAAGT TGAACATCAA AATAAAGATG AAGAAGTTCA AGGAGAGACT TCTGTGCAAG 1621 TTTACCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 1681 gcaacgaac