Construct: ORF ccsbBroadEn_13216

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012756.1_s300c1, BRDN0000389960
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
XRRA1 (143570)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 143570 XRRA1 X-ray radiation resistance ... NM_001270380.2 99.8% 99.6% 7T>C;1122G>A;1157C>G
2 human 143570 XRRA1 X-ray radiation resistance ... XM_017017224.2 98.5% 98.3% (many diffs)
3 human 143570 XRRA1 X-ray radiation resistance ... XM_017017225.2 93.4% 91.7% (many diffs)
4 human 143570 XRRA1 X-ray radiation resistance ... XM_017017222.2 91.7% 91.5% (many diffs)
5 human 143570 XRRA1 X-ray radiation resistance ... XM_011544763.2 86.1% 86% (many diffs)
6 human 143570 XRRA1 X-ray radiation resistance ... XM_011544762.1 83.7% 80.6% (many diffs)
7 human 143570 XRRA1 X-ray radiation resistance ... XM_011544760.2 80.7% 78.3% (many diffs)
8 human 143570 XRRA1 X-ray radiation resistance ... XM_011544757.1 80.3% 77.3% (many diffs)
9 human 143570 XRRA1 X-ray radiation resistance ... XM_017017223.2 79.8% 78.9% (many diffs)
10 human 143570 XRRA1 X-ray radiation resistance ... XM_011544764.1 79.4% 75.2% (many diffs)
11 human 143570 XRRA1 X-ray radiation resistance ... XM_011544756.1 78.7% 75.9% (many diffs)
12 human 143570 XRRA1 X-ray radiation resistance ... XM_017017221.1 78.4% 74.3% (many diffs)
13 human 143570 XRRA1 X-ray radiation resistance ... XM_011544755.1 76% 73.2% (many diffs)
14 human 143570 XRRA1 X-ray radiation resistance ... NM_182969.3 75.3% 72.7% (many diffs)
15 human 143570 XRRA1 X-ray radiation resistance ... XM_005273765.2 74.6% 72% (many diffs)
16 human 143570 XRRA1 X-ray radiation resistance ... XM_011544758.1 69% 65.8% (many diffs)
17 human 143570 XRRA1 X-ray radiation resistance ... XM_011544759.1 68.1% 65.6% (many diffs)
18 human 143570 XRRA1 X-ray radiation resistance ... XM_011544761.1 66.1% 63.6% (many diffs)
19 human 143570 XRRA1 X-ray radiation resistance ... XM_017017232.2 55.8% 54.4% (many diffs)
20 human 143570 XRRA1 X-ray radiation resistance ... XM_017017228.2 53.1% 53.1% (many diffs)
21 human 143570 XRRA1 X-ray radiation resistance ... XM_017017231.2 51.6% 49.1% (many diffs)
22 human 143570 XRRA1 X-ray radiation resistance ... XM_017017229.2 49.5% 47% (many diffs)
23 human 143570 XRRA1 X-ray radiation resistance ... NM_001270381.2 48.5% 46.2% (many diffs)
24 human 143570 XRRA1 X-ray radiation resistance ... XM_011544766.3 48.1% 45.8% (many diffs)
25 human 143570 XRRA1 X-ray radiation resistance ... XM_011544767.1 48.1% 45.8% (many diffs)
26 human 143570 XRRA1 X-ray radiation resistance ... XM_011544768.1 48.1% 45.8% (many diffs)
27 human 143570 XRRA1 X-ray radiation resistance ... XM_017017230.2 46.2% 39% (many diffs)
28 human 143570 XRRA1 X-ray radiation resistance ... XM_005273770.2 46% 43.8% (many diffs)
29 human 143570 XRRA1 X-ray radiation resistance ... XM_011544765.1 46% 43.8% (many diffs)
30 human 143570 XRRA1 X-ray radiation resistance ... XM_017017226.2 46% 43.8% (many diffs)
31 human 143570 XRRA1 X-ray radiation resistance ... XM_017017227.1 46% 43.8% (many diffs)
32 human 143570 XRRA1 X-ray radiation resistance ... XM_017017233.2 42.7% 36.6% (many diffs)
33 human 143570 XRRA1 X-ray radiation resistance ... XM_017017234.1 42.7% 36.6% (many diffs)
34 human 143570 XRRA1 X-ray radiation resistance ... XM_024448354.1 42.7% 36.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1860
ORF length:
1794
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC CCTCTCAGGA ATCTACAAGC TGGATGATGG GAAGCCTTAC CTGAACAACT
121GCTTCCCAGC CAGAAATCTG CTTCGCGTGC CGGAGGAAGG CCAAGGACAC TGGTTAGTGG
181TTCAGAAAGG TAACCTCAAG AAGAAGCCCA AGGGTTTGGT TGGAGCACAA GCTGAACGTC
241GGGAAAGCCT GAAGGCGACT TCTTTTGAGT TCAAGGGGAA GAAAGAGTCT CGGCGGGAAA
301ATCAGGTGGA CCTTCCTGGA CATATCCTGG ACCAGGCTTT TCTGCTGAAG CACCACTGTG
361TGAGGAAGCC ATCAGATCTG TGCACCATTA ATGCCAAGGA AAATGACTTC AAGCATTTTC
421ATTCTGTGAT TTATATCAAT GCCTCAGAAA ACCTGCTGCC TCTAGAGGCA TTTCACACGT
481TTCCAGCCCT AAAGGAACTG GATCTCGCAT TTAATGGCAT CAAAACTATC TACGTGAAAT
541ATGGAGACTT TAAGTTATTA GAATTCTTGG ACCTTTCCTT CAACAGCCTG ACTGTGGAGG
601CCATCTGTGA TTTGGGGATT CTGCCACACC TCCGTGTCCT GCTCCTCACA GGCAATGGCC
661TTACCTCCCT GCCGCCCAAT TTGGCCGTCG CAGAACAGGA GGCATCTGTA ACATCGCTGA
721CAAGCAAGAG GTACATCCTG AGGTTCCCAG CGCTGGAGAC ACTGATGCTG GATGACAACA
781GACTCTCCAA CCCCAGTTGC TTTGCCAGCC TGGCTGGGCT CAGGAGACTG AAGAAGTTAA
841GCTTGGATGA AAACAGGATT ATCAGGATCC CATACCTACA GCAAGTTCAG CTCTATGACG
901AGTCAGTAGA CTGGAATGGA GGCAGGGGAA GTCCCCATAA AGAGCCCCAA TTCATGCTGC
961AGTCCAAGCC AAGGATGCTT GAGGACTCAG ATGAGCAACT GGATTATACT GTACTGCCCA
1021TGAAAAAGGA TGTTGACCGG ACAGGGGTCC CTCCACTGCT GAAGAGCTTC CTCCAGGAGC
1081GACTGGGAAT CCACTTAATT CGAAGGAAGA TAGTAAAGCC TAAGCATCAT GTTTTGATGT
1141CTCGGAAGGA ATCATGGAAG GTGAAAAGCG AAATCCCAAA GGTGCCAAAG CAGCCTCTGG
1201TGCTCCATCA CCCGCGCATG AGGACAACCA AGTCTCCCTC AAAGGATATG CTAGAGCCAG
1261AGGCAGAGCT GGCTGAAGAT CTGCCCACTA CCAAAAGCAC TTCTGTGGAG TCAGAGATGC
1321CCACTGAGAA CCTGGAAGGC CATTCCCCGT CTTGCCGGAC CTTCGTGCCA CTGCCTCCCA
1381TCTGCTCCAA CTCCACTGTG CATAGTGAAG AGACCCTGTC CCACCTGAGT GACACAACTG
1441TCCGCCTCAG CCCAGAGCGC CCATCAGATG AGGACTCCAA GAGCACAGAG TCCATCTTCC
1501TGACCCAGGT GAGTGAACTG CCTTCCTCCG TCATCCATAA GGATGATTTA GAGTTAAAGG
1561AGAAAGACCA AAAGAAACCA CCAACGGCAC CCAGAGAGGT GAAAGGGACT CGGAGGAAAC
1621TCCCAACTGC CTTCCTTCCC AGCAAGTACC ACGGCTATGA AGAACTGCTG ACAGCCAAGC
1681CTGATCCAGC CTTCATTGAG CCAAAGGGAA TCCAGAAGAA TGCACAAGCC CTGCAACAAA
1741TGCTGAAGCA CCCACTCCTG TGCCACTCCT CCAAGCCCAA GCTGGACACT CTTCAGAAAC
1801CCTATGTTCA CAAAGAGAAA CGGGTGCTGT CCTGCACCAG TGGACAGAAC GGCGGCTGGT
1861GCCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca
1921acgaac

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