Construct: ORF ccsbBroadEn_13400
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003330.1_s300c1, BRDN0000389934
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ANKS6 (203286)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 203286 | ANKS6 | ankyrin repeat and sterile ... | XM_017014447.1 | 93.2% | 92.1% | (many diffs) |
| 2 | human | 203286 | ANKS6 | ankyrin repeat and sterile ... | XM_024447447.1 | 68% | 67.7% | (many diffs) |
| 3 | human | 203286 | ANKS6 | ankyrin repeat and sterile ... | XM_024447445.1 | 59.3% | 59% | (many diffs) |
| 4 | human | 203286 | ANKS6 | ankyrin repeat and sterile ... | XM_006716999.3 | 56.8% | 56.5% | (many diffs) |
| 5 | human | 203286 | ANKS6 | ankyrin repeat and sterile ... | NM_173551.5 | 54% | 53.9% | 1_1200del;1930G>A |
| 6 | human | 203286 | ANKS6 | ankyrin repeat and sterile ... | XM_017014445.1 | 54% | 53.9% | 1_1200del;1930G>A |
| 7 | human | 203286 | ANKS6 | ankyrin repeat and sterile ... | XM_006716998.3 | 53.9% | 53.8% | 1_1200del;1930G>A;2141_2143delAGC |
| 8 | human | 203286 | ANKS6 | ankyrin repeat and sterile ... | XM_005251794.4 | 53.1% | 52.8% | (many diffs) |
| 9 | human | 203286 | ANKS6 | ankyrin repeat and sterile ... | XM_005251793.4 | 53% | 52.8% | (many diffs) |
| 10 | human | 203286 | ANKS6 | ankyrin repeat and sterile ... | XR_001746230.1 | 50.7% | 1_305del;1035G>A;1719_2783del | |
| 11 | human | 203286 | ANKS6 | ankyrin repeat and sterile ... | XR_428520.3 | 41% | (many diffs) | |
| 12 | human | 203286 | ANKS6 | ankyrin repeat and sterile ... | XR_242576.3 | 37.9% | 1_1238del;1968G>A;2652_3716del | |
| 13 | human | 203286 | ANKS6 | ankyrin repeat and sterile ... | XR_929736.2 | 37.9% | (many diffs) | |
| 14 | mouse | 75691 | Anks6 | ankyrin repeat and sterile ... | XM_006538333.2 | 46% | 46.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 70
- ORF end:
- 1483
- ORF length:
- 1413
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG GGTGTACAAA 61 AAAGTTGGCA TGCTGCTGAA TGATCCCGAC ACGGAACTTG TTCGACTGCT GGCATCTGTC 121 TGCATGCAGG TGAATAAAGA CAAAGGCCGG CCGAGCCACC AGCCTCCCCT GCCCCACTCG 181 AAGGTCCGAC AGCCCTGGAG CATCCCAGTG CTGCCCGATG ACAAGGGTGG ACTGAAGTCC 241 TGGTGGAACC GAATGTCCAA TCGGTTCCGA AAGCTCAAAC TGATGCAGAC GCTGCCCCGT 301 GGGCTGTCCA GCAACCAGCC TTTGCCTTTC TCTGACGAGC CTGAGCCAGC TCTGGACTCC 361 ACAATGAGGG CTGCCCCCCA GGACAAGACA AGCCGCTCTG CACTCCCTGA TGCGGCCCCT 421 GTGACCAAAG ACAATGGTCC TGGGAGCACA AGAGGAGAAA AGGAAGACAC GTTATTGACA 481 ACCATGCTTC GAAACGGAGC TCCCCTCACC AGACTCCCGA GTGACAAGCT GAAAGCAGTC 541 ATCCCCCCAT TCCTACCCCC TTCCAGTTTT GAGCTGTGGA GCTCTGATCG GTCCCGGACG 601 CGTCACAACG GGAAGGCAGA CCCCATGAAG ACTGCGCTGC CCCAGAGAGC CAGCAGGGGC 661 CACCCCGTGG GCGGCGGGGG CACAGACACT ACACCCGTCA GGCCTGTTAA ATTTCCAAGC 721 CTCCCCAGAA GCCCAGCCTC TTCTGCCAAT TCTGGAAACT TCAACCACTC GCCTCATTCA 781 TCGGGCGGCT CCAGTGGGAT AGGTGTGAGC CGGCACGGTG GGGAGCTGCT TAACCGCTCA 841 GGTGGCAGCA TAGACAATGT CTTGTCCCAA ATCGCTGCCC AGAGGAAAAA AGCAGCCGGA 901 TTATTGGAGC AGAAACCCAG CCATCGGTCA AGCCCTGTGG GGCCAGCACC GGGGTCCAGC 961 CCGTCTGAGC TTCCAGCCTC CCCTGCAGGT GGCAGCGCTC CTGTTGGCAA GAAATTGGAG 1021 ACCAGCAAAA GGCCTCCATC TGGAACTTCC ACTACCTCCA AGAGCACCTC TCCAACCCTC 1081 ACGCCCTCCC CCTCACCCAA AGGGCACACT GCAGAGTCCT CAGTGTCTTC CTCGTCATCC 1141 CATCGGCAGT CCAAGAGCAG TGGGGGCTCC AGCAGTGGCA CCATCACAGA TGAGGATGAA 1201 CTGACTGGAA TCCTTAAGAA ATTATCACTT GAGAAATATC AGCCCATTTT TGAGGAACAA 1261 GAGGTGGACA TGGAAGCGTT CCTCACACTG ACTGACGGTG ACTTGAAGGA GCTGGGAATT 1321 AAGACAGATG GGTCCAGGCA GCAGATTCTG GCAGCGATTT CTGAACTGAA CGCAGGCAAG 1381 GGACGCGAGA GACAAATTTT ACAGGAAACC ATTCACAACT TTCACTCTTC CTTTGAGAGC 1441 AGTGCCAGCA ACACCAGGGC CCCTGGCAAC AGCCCCTGTG CGTGCCCAAC TTTCTTGTAC 1501 AAAGTtggca ttataagaaa gcattgctta tcaatttgtt gcaacgaac