Construct: ORF ccsbBroadEn_13403
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001129.1_s300c1, BRDN0000394538
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ATAD3C (219293)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 219293 | ATAD3C | ATPase family AAA domain co... | NM_001039211.3 | 12.7% | .5% | 1_1052del;1233_1234ins185 |
| 2 | human | 55210 | ATAD3A | ATPase family AAA domain co... | NM_001170536.2 | 9.4% | 1.6% | (many diffs) |
| 3 | human | 83858 | ATAD3B | ATPase family AAA domain co... | XM_005244806.3 | 8.8% | 4.4% | (many diffs) |
| 4 | human | 55210 | ATAD3A | ATPase family AAA domain co... | NM_001170535.3 | 8.2% | 1.4% | (many diffs) |
| 5 | human | 55210 | ATAD3A | ATPase family AAA domain co... | XM_024448098.1 | 7.9% | 5.9% | (many diffs) |
| 6 | human | 55210 | ATAD3A | ATPase family AAA domain co... | NM_018188.5 | 7.7% | 1.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 435
- ORF length:
- 366
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GCCGGAAGAT CGCACAGCTG GCCGTGTCCT GGCAGGCCAC GGCGTATGCC 121 TCCAAGGACG GGGTCCTGAC CGAGGCCATG ATGGACGCCT GCGTGCAAGA CTTTGTCCAG 181 CAGCACCAGC AGATGATGCG CTGGCTGAAG GGGGAGAGGC CTGGGCCCGA GGACGAGCAA 241 CCCTCATCCT GAGTCCATGG GGAGACCACA CCTCACGGAG CCTGGCCGCG GACCCCTCCC 301 ACCCCTGCCT TTGCGGCCCC GCACATTTAG GAAATACTCC CCGTAATAAA GTCCCACGGG 361 GGCCGCACCG CTGTGTCTAT TGGCTGACAC GGGGCGGGGT TTGGGGCCCC CTAACGTCCC 421 CCTGGGGTCA AAGGTTGCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 481 tatcaatttg ttgcaacgaa c