Construct: ORF ccsbBroadEn_13422
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010093.1_s300c1, BRDN0000455871
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- AK9 (221264)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 221264 | AK9 | adenylate kinase 9 | XM_011535558.1 | 26% | 26% | 1_2646del |
| 2 | human | 221264 | AK9 | adenylate kinase 9 | XM_017010389.1 | 23.2% | 23.2% | 1_3069del |
| 3 | human | 221264 | AK9 | adenylate kinase 9 | XM_017010387.2 | 20.2% | 20.2% | 1_3672del |
| 4 | human | 221264 | AK9 | adenylate kinase 9 | XM_017010385.2 | 18.2% | 18.2% | 1_4173del |
| 5 | human | 221264 | AK9 | adenylate kinase 9 | XM_011535554.2 | 16.4% | 16.4% | 1_4713del |
| 6 | human | 221264 | AK9 | adenylate kinase 9 | NM_001145128.2 | 16.2% | 16.2% | 1_4803del |
| 7 | human | 221264 | AK9 | adenylate kinase 9 | XM_011535552.3 | 16.1% | 16.1% | 1_4818del |
| 8 | human | 221264 | AK9 | adenylate kinase 9 | XM_011535553.3 | 16.1% | 16.1% | 1_4818del |
| 9 | human | 221264 | AK9 | adenylate kinase 9 | XM_006715376.3 | 15.6% | 15.6% | 1_5019del |
| 10 | human | 221264 | AK9 | adenylate kinase 9 | XM_011535550.2 | 15.5% | 15.5% | 1_5034del |
| 11 | human | 221264 | AK9 | adenylate kinase 9 | XM_024446350.1 | 15.5% | 15.5% | 1_5034del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 999
- ORF length:
- 930
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGTGAATAAA TACATGCAGA CATACCTGGA AAGAATAAAA GCAGGAAAAG 121 CTGCCTGCAT TGACAAGTTA TGTATCACAC CTCAAGAGCT GCTTTCTCGC CTGGGAGAAT 181 TTGAACAGTT CTGCCCTGTC AGCCTGGCAG AATCCCAGGA ATTATTTGAT TGCTCTGCAA 241 CTGACTCCTT GGAATTTGCA GCAGAGTTCA GGGGGCACTA CTATAAAATG AGTTCTCAGG 301 AAAAACTGAA TAAATTCTTG GAGAACCCAG AATTGTACGT GCCTCCCTTA GCACCTCATC 361 CACTCCCATC TGCTGACATG ATCCCCAAAA GACTGACACT GTCAGAGCTG AAGAGTCGAT 421 TCCCTAAGTG TGCGGAGCTC CAGGGCTACT GTCCAGTGAC CTATAAGGAT GGAAACCAAA 481 GATATGAAGC TCTAGTACCT GGTAGCATTA ACTATGCTTT AGAATATCAT AATCGTATAT 541 ATATTTGTGA GAACAAAGAA AAACTCCAGA AATTTTTGAG GTCGCCACTG AAATACTGGG 601 AACAGAAGCT TCCACACAAG CTTCCCCCAT TAAGGGAACC GATACTTCTT ACTAGTCTTC 661 CTTTGCCTGG ATATCTGGAA CAGGGTATTG CAACTTCTCT AATTAAAGCA ATGAATGCAG 721 CGGGATGCTT AAAGCCCAAG TTCCCCTTTT TAAGTATAAG GAGATCTGCA CTGCTATATA 781 TAGCACTTCA TCTCAAAGCA TTTAATCCCA AAGGTTCCGA ATACACAAGA AAAAAGTATA 841 AGAAGAAGAT GGAGCAGTTT ATGGAGAGTT GTGAACTCAT AACATACTTG GGTGCCAAGA 901 TGACCAGAAA ATACAAGGAA CCTCAGTTCA GAGCCATTGA CTTTGATCAT AAGTTAAAGA 961 CCTTTCTCTC TCTCAGAAAT ATAGACCCAA TTAATGGGTT GCCAACTTTC TTGTACAAAG 1021 TTGGcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac