Construct: ORF ccsbBroadEn_13508
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004933.1_s300c1, BRDN0000385086
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CLEC18C (283971)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 283971 | CLEC18C | C-type lectin domain family... | XM_024450241.1 | 78.3% | 72.8% | (many diffs) |
| 2 | human | 283971 | CLEC18C | C-type lectin domain family... | XM_024450240.1 | 76.1% | 72.5% | (many diffs) |
| 3 | human | 283971 | CLEC18C | C-type lectin domain family... | XM_024450242.1 | 69.7% | 66.3% | (many diffs) |
| 4 | human | 283971 | CLEC18C | C-type lectin domain family... | NM_173619.4 | 66.8% | 65.2% | (many diffs) |
| 5 | human | 283971 | CLEC18C | C-type lectin domain family... | XM_024450239.1 | 66.8% | 65.2% | (many diffs) |
| 6 | human | 497190 | CLEC18B | C-type lectin domain family... | XM_005255976.2 | 66.5% | 64.5% | (many diffs) |
| 7 | human | 497190 | CLEC18B | C-type lectin domain family... | XM_017023255.1 | 66.5% | 64.5% | (many diffs) |
| 8 | human | 348174 | CLEC18A | C-type lectin domain family... | NM_001136214.3 | 66.5% | 64.7% | (many diffs) |
| 9 | human | 348174 | CLEC18A | C-type lectin domain family... | NM_001271197.2 | 66.5% | 64.7% | (many diffs) |
| 10 | human | 348174 | CLEC18A | C-type lectin domain family... | NM_001370523.2 | 66.5% | 64.7% | (many diffs) |
| 11 | human | 348174 | CLEC18A | C-type lectin domain family... | NM_182619.4 | 66.5% | 64.7% | (many diffs) |
| 12 | human | 497190 | CLEC18B | C-type lectin domain family... | NM_001011880.2 | 65.2% | 63.2% | (many diffs) |
| 13 | human | 348174 | CLEC18A | C-type lectin domain family... | XM_017023206.1 | 62.3% | 60.7% | (many diffs) |
| 14 | human | 283971 | CLEC18C | C-type lectin domain family... | XM_011523036.2 | 48.9% | 47.3% | (many diffs) |
| 15 | human | 497190 | CLEC18B | C-type lectin domain family... | XM_011523093.3 | 48.7% | 46.6% | (many diffs) |
| 16 | human | 348174 | CLEC18A | C-type lectin domain family... | XR_001751900.1 | 47.3% | (many diffs) | |
| 17 | human | 348174 | CLEC18A | C-type lectin domain family... | XR_002957800.1 | 47.2% | (many diffs) | |
| 18 | human | 348174 | CLEC18A | C-type lectin domain family... | XM_017023207.1 | 45.8% | 44.3% | (many diffs) |
| 19 | human | 348174 | CLEC18A | C-type lectin domain family... | XM_017023208.2 | 45.8% | 44.3% | (many diffs) |
| 20 | human | 497190 | CLEC18B | C-type lectin domain family... | XR_002957807.1 | 45% | (many diffs) | |
| 21 | human | 497190 | CLEC18B | C-type lectin domain family... | XR_001751905.1 | 45% | (many diffs) | |
| 22 | human | 497190 | CLEC18B | C-type lectin domain family... | XR_002957808.1 | 33.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 969
- ORF length:
- 903
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC CGGAGCCCTG AACAGGAAGG AGAGTTTCTT GCTCCTCTCC CTGCACAACC 121 GCCTGCGCAG CTGGGTCCAG CCCCCTGCGG CTGACAGGCG GAGGCTGGAC TGGAGTGACA 181 GCCTGGCCCA ACTGGCTCAA GCCAGGGCAG CCCTCTGTGG AATCCCAACC CCGAGCCTGG 241 CGTCCGGCCT GTGGCGCACC CTGCAAGTGG GCTGGAACAT GCAGCTGCTG CCCGCGGGCT 301 TGGCGTCCTT TGTTGAAGTG GTCAGCCTAT GGTTTGCAGA GGGGCAGCGG TACAGCCACG 361 CGGCAGGAGA GTGTGCTCGC AACGCCACCT GCACCCACTA CACGCAGCTC GTGTGGGCCA 421 CCTCAAGCCA GCTGGGCTGT GGGCGGCACC TGTGCTCTGC AGGCCAGGCA GCGATAGAAG 481 CCTTTGTCTG TGCCTACTCC CCCAGAGGCA ACTGGGAGGT CAACGGGAAG ACAATCGTCC 541 CCTATAAGAA GGGTGCCTGG TGTTCGCTCT GCACAGCCAG TGTCTCAGGC TGCTTCAAAG 601 CCTGGGACCA TGCAGGGGGG CTCTGTGAGG TCCCCAGGAA TCCTTGTCGC ATGAGCTGCC 661 AGAACCATGG ACGTCTCAAC ATCAGCACCT GCCACTGCCA CTGTCCCCCT GGCTACACGG 721 GCAGATACTG CCAAGTGAGG TGCAGCCTGC AGTGTGTGCA CGGCCGGTTC CGGGAGGAGG 781 AGTGCTCGTG CGTCTGTGAC ATCGGCTACG GGGGAGCCCA GTGTGCCACC AAGGTGCATT 841 TTCCCTTCCA CACCTGTGAC CTGAGGATCG ACGGAGACTG CTTCATGGTG TCTTCAGAGG 901 CAGACACCTA TTACAGAGCC AGGATGAAAT GTCAGGTGAC AGTCACCCCT AGCTTCCTAG 961 GAACCCCCTA CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa 1021 tttgttgcaa cgaac