Construct: ORF ccsbBroadEn_13519
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005445.1_s300c1, BRDN0000390902
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC26A11 (284129)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 284129 | SLC26A11 | solute carrier family 26 me... | NM_001166347.2 | 97.1% | 97% | 1_51del;1747G>A |
| 2 | human | 284129 | SLC26A11 | solute carrier family 26 me... | NM_001166348.2 | 97.1% | 97% | 1_51del;1747G>A |
| 3 | human | 284129 | SLC26A11 | solute carrier family 26 me... | NM_001166349.2 | 97.1% | 97% | 1_51del;1747G>A |
| 4 | human | 284129 | SLC26A11 | solute carrier family 26 me... | NM_173626.4 | 97.1% | 97% | 1_51del;1747G>A |
| 5 | human | 284129 | SLC26A11 | solute carrier family 26 me... | XM_006721833.2 | 93.4% | 93.3% | 1_51del;427_498del;1819G>A |
| 6 | human | 284129 | SLC26A11 | solute carrier family 26 me... | XM_017024507.1 | 93.4% | 93.3% | 1_51del;427_498del;1819G>A |
| 7 | human | 284129 | SLC26A11 | solute carrier family 26 me... | XM_017024505.1 | 84.5% | 84.4% | 1_249del;625_696del;2017G>A |
| 8 | human | 284129 | SLC26A11 | solute carrier family 26 me... | XM_017024506.1 | 81.5% | 80.7% | (many diffs) |
| 9 | human | 284129 | SLC26A11 | solute carrier family 26 me... | XM_011524654.1 | 74.8% | 57.2% | 0_1ins301;238_239ins143;1252G>A |
| 10 | human | 284129 | SLC26A11 | solute carrier family 26 me... | XM_024450711.1 | 74.8% | 57.2% | 0_1ins301;238_239ins143;1252G>A |
| 11 | human | 284129 | SLC26A11 | solute carrier family 26 me... | XM_024450710.1 | 71.8% | 66.2% | (many diffs) |
| 12 | human | 284129 | SLC26A11 | solute carrier family 26 me... | XR_001752499.1 | 62% | (many diffs) | |
| 13 | human | 284129 | SLC26A11 | solute carrier family 26 me... | XR_001752498.1 | 33.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1833
- ORF length:
- 1767
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC CCCGAGCGCC TGCTGCTGCT CCCCTGCGGC CCTGCAGAGG AGGCTGCCCA 121 TCCTGGCGTG GCTGCCCAGC TACTCCCTGC AGTGGCTGAA GATGGATTTC GTCGCCGGCC 181 TCTCAGTTGG CCTCACTGCC ATTCCCCAGG CGCTGGCCTA TGCTGAAGTG GCTGGACTCC 241 CGCCCCAGTA TGGCCTCTAC TCTGCCTTCA TGGGCTGCTT CGTGTATTTC TTCCTGGGCA 301 CCTCCCGGGA TGTGACTCTG GGCCCCACCG CCATTATGTC CCTCCTGGTC TCCTTCTACA 361 CCTTCCATGA GCCCGCCTAC GCTGTGCTGC TGGCCTTCCT GTCCGGCTGC ATCCAGCTGG 421 CCATGGGGGT CCTGCGTTTG GGGTTCCTGC TGGACTTCAT TTCCTACCCC GTCATTAAAG 481 GCTTCACCTC TGCTGCTGCC GTCACCATCG GCTTTGGACA GATCAAGAAC CTGCTGGGAC 541 TACAGAACAT CCCCAGGCCG TTCTTCCTGC AGGTGTACCA CACCTTCCTC AGGATTGCAG 601 AGACCAGGGT AGGTGACGCC GTCCTGGGGC TGGTCTGCAT GCTGCTGCTG CTGGTGCTGA 661 AGCTGATGCG GGACCACGTG CCTCCCGTCC ACCCCGAGAT GCCCCCTGGT GTGCGGCTCA 721 GCCGTGGGCT GGTCTGGGCT GCCACGACAG CTCGCAACGC CCTGGTGGTC TCCTTCGCAG 781 CCCTGGTTGC GTACTCCTTC GAGGTGACTG GATACCAGCC TTTCATCCTA ACAGGGGAGA 841 CAGCTGAGGG GCTCCCTCCA GTCCGGATCC CGCCCTTCTC AGTGACCACA GCCAACGGGA 901 CGATCTCCTT CACCGAGATG GTGCAGGACA TGGGAGCCGG GCTGGCCGTG GTGCCCCTGA 961 TGGGCCTCCT GGAGAGCATT GCGGTGGCCA AAGCCTTCGC ATCTCAGAAT AATTACCGCA 1021 TCGATGCCAA CCAGGAGCTG CTGGCCATCG GTCTCACCAA CATGTTGGGC TCCCTCGTCT 1081 CCTCCTACCC GGTCACAGGC AGCTTTGGAC GGACAGCCGT GAACGCTCAG TCGGGGGTGT 1141 GCACCCCGGC GGGGGGCCTG GTGACGGGAG TGCTGGTGCT GCTGTCTCTG GACTACCTGA 1201 CCTCACTGTT CTACTACATC CCCAAGTCTG CCCTGGCTGC CGTCATCATC ATGGCCGTGG 1261 CCCCGCTGTT CGACACCAAG ATCTTCAGGA CGCTCTGGCG TGTTAAGAGG CTGGACCTGC 1321 TGCCCCTGTG CGTGACCTTC CTGCTGTGCT TCTGGGAGGT GCAGTACGGC ATCCTGGCCG 1381 GGGCCCTGGT GTCTCTGCTC ATGCTCCTGC ACTCTGCAGC CAGGCCTGAG ACCAAGGTGT 1441 CAGAGGGGCC GGTTCTGGTC CTGCAGCCGG CCAGCGGCCT GTCCTTCCCT GCCATGGAGG 1501 CTCTGCGGGA GGAGATCCTA AGCCGGGCCC TGGAAGTGTC CCCGCCACGC TGCCTGGTCC 1561 TGGAGTGCAC CCATGTCTGC AGCATCGACT ACACTGTGGT GCTGGGACTC GGCGAGCTCC 1621 TCCAGGACTT CCAGAAGCAG GGCGTCGCCC TGGCCTTTGT GGGCCTGCAG GTCCCCGTTC 1681 TCCGTGTCCT GCTGTCCGCT GACCTGAAGG GGTTCCAGTA CTTCTCTACC CTGGAAGAAG 1741 CAGAGAAGCA CCTGAGGCAG AAGCCAGGGA CCCAGCCCTA CAACATCAGA GAAGACTCCA 1801 TTCTGGACCA AAAGGTTGCC CTGCTCAAGG CATACCCAAC TTTCTTGTAC AAAGTtggca 1861 ttataagaaa gcattgctta tcaatttgtt gcaacgaac