Construct: ORF ccsbBroadEn_13590

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002423.1_s300c1, BRDN0000390558
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ARMH1 (339541)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 339541 ARMH1 armadillo like helical doma... XM_017001144.1 88.1% 82% 846_847insGACCCCTCGGTTCTCCA;905_1008del
2 human 339541 ARMH1 armadillo like helical doma... XM_017001145.1 84.6% 78.7% (many diffs)
3 human 339541 ARMH1 armadillo like helical doma... XM_017001146.2 83.5% 80.1% (many diffs)
4 human 339541 ARMH1 armadillo like helical doma... XM_017001143.1 81.2% 75.7% 846_847insGACCCCTCGGTTCTCCA;904_1095delinsG
5 human 339541 ARMH1 armadillo like helical doma... XM_017001147.1 78.8% 78.5% 724_725insCC;726_727ins193
6 human 339541 ARMH1 armadillo like helical doma... XM_017001142.1 75.8% 70.8% 846_847insGACCCCTCGGTTCTCCA;904_1173delinsG
7 human 339541 ARMH1 armadillo like helical doma... XM_017001140.1 71.1% 71.2% 921_1293delinsG
8 human 339541 ARMH1 armadillo like helical doma... NM_001145636.2 69.7% 69.7% 922_1320del
9 human 339541 ARMH1 armadillo like helical doma... XM_006710603.2 68.7% 68.8% 921_1338delinsG
10 human 339541 ARMH1 armadillo like helical doma... XM_006710604.2 68.7% 68.8% 921_1338delinsG
11 human 339541 ARMH1 armadillo like helical doma... XM_011541340.1 68.7% 68.8% 921_1338delinsG
12 human 339541 ARMH1 armadillo like helical doma... XM_011541341.1 68.7% 68.8% 921_1338delinsG
13 human 339541 ARMH1 armadillo like helical doma... XM_011541343.1 68.7% 68.8% 921_1338delinsG
14 human 339541 ARMH1 armadillo like helical doma... XM_011541345.1 65.6% 65.6% 1_1delAins40;3G>A;882_1299delinsG
15 human 339541 ARMH1 armadillo like helical doma... XR_001737147.1 54.9% 1_578del;1499_1673delinsG
16 human 339541 ARMH1 armadillo like helical doma... XR_001737144.1 53.9% 1_190del;1036_1037insGACCCCTCGGTTCTCCA;1094_1657delinsG
17 human 339541 ARMH1 armadillo like helical doma... XR_001737143.1 53.1% 1_191del;1037_1038insGACCCCTCGGTTCTCCA;1096_1685del
18 human 339541 ARMH1 armadillo like helical doma... XM_011541349.2 53% 53.1% 0_1ins210;711_1128delinsG
19 human 339541 ARMH1 armadillo like helical doma... XR_001737142.1 52.4% 1_192del;1038_1039insGACCCCTCGGTTCTCCA;1096_1704delinsG
20 human 339541 ARMH1 armadillo like helical doma... XR_001737141.1 50.1% 1_190del;1036_1037insGACCCCTCGGTTCTCCA;1095_1787del
21 human 339541 ARMH1 armadillo like helical doma... XR_001737140.1 49.5% 1_190del;1036_1037insGACCCCTCGGTTCTCCA;1094_1805delinsG
22 human 339541 ARMH1 armadillo like helical doma... XR_001737146.1 46.9% 1_578del;1499_1959delinsG
23 human 339541 ARMH1 armadillo like helical doma... XR_001737139.1 41.6% 1_578del;1499_2210delinsG
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
987
ORF length:
921
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAC TTCTATAAAG GAGCAGGCAG CAATTAGCAG GCTCTTAAGT TTTTTACAGG
121AGTGGGACAA CGCTGGCAAA GTCGCAAGGA GTCACATCCT CGACAAGTTC ATTGAAACCA
181ACCAAGGCAA GACTGCCCCT GAACTGGAGC AGGAGTTTTC CCAGGGAGCC AGTTTGTTCC
241TGGTACGCTT GACCACCTCG CTTAGAATCA CCTATATGAC TGACTCATGT TTAGAAAAGC
301TTCTCAGGTC CATTGGCATC TTCTTATCAG CTGTAAGCAG TAATCGGTAC CTTATAGAAT
361TTCTTGAGGT TGGAGGTGTC CTAACCCTCT TGGAAATACT TGGGCTAGAG AAGATCAAGG
421AGGAGGCCAA GAAGGAATCT GTCAAACTAC TTCAGGTTAT TGCGAACTCT GGCAGGACAT
481ACAAGGAACT CATTTGTGAA AGCTATGGTG TACGATCCAT AGCAGAATTT TTGGCAAAGT
541CTAAGTCAGA AGAGACCCAG GAGGAAGTGC AGGTTCTGTT GGATTCTTTG GTCCACGGCA
601ATCCCAAGTA CCAAAATCAA GTGTATAAAG GTCTAATAGC TTTGCTGCCC TGCGAGTCCC
661CAAAAGCCCA GCAGCTGTCC CTGCAGACTC TCAGGACTGC CCAGCCAATC ATTGGGACCA
721CACACCCCAG CATCGTGGAC TGCGTGCTGA AGGTGCTGGG CACGATGCAC CTGGAAGTCC
781AGTATGAAGC CATCGAGTTG ATCAAAGACC TGGTCGGTTA CGATGTGCGC CAGGCGCTGC
841TCAAGGGCCT CGTGGCGCTG CTGATACCGT CGGTCAAGGA GATCTCCAAA CTGCAGGCCA
901AGATCCTCAG TGACCCCTCG GTTCTCCAGC TCACCCCCAG CCTGCCGATG TTTTTGCAGC
961AGGCCGCGGC CGCCAAGGCC ATCGGGTACC CAACTTTCTT GTACAAAGTt ggcattataa
1021gaaagcattg cttatcaatt tgttgcaacg aac

Download FASTA (ORF) (Full)