Construct: ORF ccsbBroadEn_13592

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016998.1_s300c1, BRDN0000455931
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
GADL1 (339896)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 339896 GADL1 glutamate decarboxylase like 1 XM_017006298.1 81.6% 81.6% 0_1ins186
2 human 339896 GADL1 glutamate decarboxylase like 1 XM_017006297.1 67.1% 67.1% 1_495del
3 human 339896 GADL1 glutamate decarboxylase like 1 NM_207359.2 64.6% 64.6% 1_552del
4 mouse 73748 Gadl1 glutamate decarboxylase-like 1 NM_028638.1 58.7% 61.9% (many diffs)
5 mouse 73748 Gadl1 glutamate decarboxylase-like 1 XM_006512319.3 56.9% 60% (many diffs)
6 mouse 73748 Gadl1 glutamate decarboxylase-like 1 XM_017313627.1 50.7% 53.2% (many diffs)
7 mouse 73748 Gadl1 glutamate decarboxylase-like 1 XM_017313628.1 30% 29.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1080
ORF length:
1011
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GTATGCAATG AATTTAGCTA GATACAAATA TTGTCCTGAT ATTAAGGAAA
121AGGGGCTGTC TGGTTCGCCA AGATTAATCC TTTTCACATC TGCAGAGTGT CATTACTCTA
181TGAAGAAGGC AGCCTCTTTT CTTGGGATTG GCACTGAGAA TGTTTGCTTT GTGGAAACAG
241ATGGAAGAGG TAAAATGATA CCTGAGGAAC TGGAGAAGCA AGTCTGGCAA GCCAGAAAAG
301AGGGGGCAGC ACCGTTTCTT GTCTGTGCCA CTTCTGGTAC AACTGTGTTG GGAGCTTTTG
361ACCCTCTGGA TGAAATAGCA GACATCTGCG AGAGGCACAG CCTCTGGCTT CATGTAGATG
421CTTCTTGGGG TGGCTCAGCT TTGATGTCGA GGAAGCACCG CAAGCTTCTG CATGGCATCC
481ACAGGGCTGA CTCTGTGGCC TGGAACCCAC ACAAGATGCT GATGGCTGGG ATCCAGTGCT
541GTGCTCTCCT TGTGAAAGAC AAATCTGATC TTCTTAAAAA ATGCTACTCT GCCAAGGCAT
601CTTACCTCTT CCAGCAGGAT AAATTCTATG ATGTGAGCTA TGACACAGGA GACAAGTCTA
661TCCAGTGTAG CAGAAGACCA GATGCATTCA AGTTCTGGAT GACCTGGAAG GCCCTGGGTA
721CATTAGGCCT TGAAGAAAGA GTTAATCGTG CTCTTGCTTT ATCTAGGTAC CTAGTAGATG
781AAATCAAGAA AAGAGAAGGA TTCAAGTTAC TGATGGAACC TGAATATGCC AATATTTGCT
841TTTGGTACAT TCCACCGAGC CTCAGAGAGA TGGAAGAAGG ACCCGAGTTC TGGGCAAAAC
901TTAATTTGGT GGCCCCAGCC ATTAAGGAGA GGATGATGAA GAAGGGAAGC TTGATGCTGG
961GCTACCAGCC GCACCGGGGA AAGGTCAACT TCTTCCGCCA GGTGGTGATC AGCCCTCAAG
1021TGAGCCGGGA GGACATGGAC TTCCTCCTGG ATGAGATAGA CTTACTGGGT AAAGACATGT
1081TGCCAACTTT CTTGTACAAA GTTGGcatta taagaaagca ttgcttatca atttgttgca
1141acgaac

Download FASTA (ORF) (Full)