Construct: ORF ccsbBroadEn_13613
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002568.1_s300c1, BRDN0000384984
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SERINC2 (347735)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 347735 | SERINC2 | serine incorporator 2 | NM_001199039.2 | 26.1% | 26.1% | 1_885del;924_925insCAG |
| 2 | human | 347735 | SERINC2 | serine incorporator 2 | NM_178865.5 | 23% | 23% | 1_1050del;1089_1090insCAG |
| 3 | human | 347735 | SERINC2 | serine incorporator 2 | NM_001199037.1 | 22.8% | 22.8% | 1_1062del;1101_1102insCAG |
| 4 | human | 347735 | SERINC2 | serine incorporator 2 | NM_018565.3 | 22.8% | 22.8% | 1_1062del;1101_1102insCAG |
| 5 | human | 347735 | SERINC2 | serine incorporator 2 | NM_001199038.2 | 22.5% | 22.5% | 1_1077del;1116_1117insCAG |
| 6 | mouse | 230779 | Serinc2 | serine incorporator 2 | NM_001253386.1 | 22.5% | 22.8% | (many diffs) |
| 7 | mouse | 230779 | Serinc2 | serine incorporator 2 | XM_006503064.3 | 22.5% | 22.8% | (many diffs) |
| 8 | mouse | 230779 | Serinc2 | serine incorporator 2 | XM_006503065.3 | 22.5% | 22.8% | (many diffs) |
| 9 | mouse | 230779 | Serinc2 | serine incorporator 2 | XM_006503066.1 | 22.5% | 22.8% | (many diffs) |
| 10 | mouse | 230779 | Serinc2 | serine incorporator 2 | XM_017320158.1 | 22.5% | 22.8% | (many diffs) |
| 11 | mouse | 230779 | Serinc2 | serine incorporator 2 | NM_172702.3 | 19.7% | 20% | (many diffs) |
| 12 | mouse | 230779 | Serinc2 | serine incorporator 2 | XM_006503063.1 | 19.4% | 19.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 384
- ORF length:
- 318
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCA GACCGAGGAG TGCCCACCTA TGCTAGACGC CACACAGCAG CAGCAGCAGC 121 AGGTGGCAGC CTGTGAGGGC CGGGCCTTTG ACAACGAGCA GGACGGCGTC ACCTACAGCT 181 ACTCCTTCTT CCACTTCTGC CTGGTGCTGG CCTCACTGCA CGTCATGATG ACGCTCACCA 241 ACTGGTACAA GCCCGGTGAG ACCCGGAAGA TGATCAGCAC GTGGACCGCC GTGTGGGTGA 301 AGATCTGTGC CAGCTGGGCA GGGCTGCTCC TCTACCTGTG GACCCTGGTA GCCCCACTCC 361 TCCTGCGCAA CCGCGACTTC AGCTGCCCAA CTTTCTTGTA CAAAGTtggc attataagaa 421 agcattgctt atcaatttgt tgcaacgaac