Construct: ORF ccsbBroadEn_13621

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006348.1_s300c1, BRDN0000398150
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CFAP100 (348807)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 348807 CFAP100 cilia and flagella associat... NM_182628.3 99.8% 99.8% 416_417insAGC
2 human 348807 CFAP100 cilia and flagella associat... XM_006713623.2 99.8% 99.8% 416_417insAGC
3 human 348807 CFAP100 cilia and flagella associat... XM_017006322.1 73.8% 49.1% 416_417insAGC;953_954insAGAGGGTC;1356_1357ins469
4 human 348807 CFAP100 cilia and flagella associat... XM_017006323.1 70.9% 52.3% (many diffs)
5 human 348807 CFAP100 cilia and flagella associat... XM_017006321.1 65.5% 59.8% (many diffs)
6 human 348807 CFAP100 cilia and flagella associat... XR_001740141.2 63.3% (many diffs)
7 human 348807 CFAP100 cilia and flagella associat... XM_017006325.1 61.2% 59.2% (many diffs)
8 human 348807 CFAP100 cilia and flagella associat... XM_017006326.1 59.4% 59.1% (many diffs)
9 human 348807 CFAP100 cilia and flagella associat... XM_017006327.1 58.9% 51.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1905
ORF length:
1836
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GTCTGAGATA CCGTCCACTA TAGTCTCCAA GAACATGACC AATGACAAGA
121ACAGCCTGGA ATCCATGAAC ATCAGCTCTT CTTCAAGCAC TGAAGAGAAC CCAAAGAAAC
181AGGCAAGAAA AAACGAAGAA CATGGTCCTG ACCCTTCAGC GAACCCTTTC CACTTATCTG
241GGGATGTGGA TTTCTTCTTG CTCAGAGATC AGGAGCGGAA TAAGGCTCTC TCCGAACGGC
301AGCAGCAGAA GACGATGCGG GTGCACCAGA AGATGACCTA CTCCTCGAAA GTGTCGGCTA
361AGCACACCAG CCTGCGGCGG CAGCTGCAGC TGGAGGACAA GCAGGAGGAC CTGGAGGCGC
421GCGCCGAGGC CGAGCATCAG CGCGCCTTCC GCGACTACAC GACCTGGAAG CTCACCTTGA
481CCAAAGCAGA AAAGAATGTG GAGCCTGAGA ACATGAGTGG CTACATTAAG CAGAAGCGGC
541AAATGTTCCT CCTCCAGTAT GCCCTGGATG TCAAGCGGAG AGAGATCCAG CGGCTGGAGA
601CGCTGGCGAC CAAAGAGGAG GCCAGGCTGG AGCGGGCCGA GAAATCCCTG GAGAAGGACG
661CCGCCTTGTT CGACGAGTTC GTCAGGGAGA ATGACTGCAG CTCCGTGCAG GCCATGAGAG
721CGGCTGAGAA GGAGACCAAA GCCAAGATAG AGAAGATCCT TGAGATCCGG GACCTCACCA
781CCCAGATTGT TAATATCAAA AGTGAGATCT CCAGATTTGA AGACACTCTG AAGCATTACA
841AGGTCTATAA GGATTTCCTA TACAAGCTGT CGCCCAAGGA GTGGCTTGAA GAACAGGAAA
901AGAAACACTC GTTTCTCAAA AAGGCCAAGG AGGTCTCCGA GGCTTCCAAA GAGAGCAGTG
961TTAACTCCAC ACCAGGGGAC AAAGGACCAG GGATCAAGGG CAAGGCGAGC TCCATGTGGG
1021CCAAAGAGGG TCAGGGTACA AAGAAGCCCT GGAGGTTTCT GCAGACGATG CGGCTGGGGC
1081GGAGCCCGTC TTACCTGAGC AGCCCCCAGC AAGGCAGCCA GCCCAGCGAG TCCAGCGGTG
1141GCGACTCCAG AGGGTCGAAC TCTCCCATCC CCCCCACGCA GGAGGACACC GACAGCGATG
1201GGGAGGAACC ACAGCTGTAC TTCACGGAGC CCCAGCAGCT CCTGGATGTC TTCCGAGAGC
1261TGGAGGAGCA GAACCTGTCG CTGATCCAGA ACAGCCAGGA GACGGAGAAG ACCCTGGAGG
1321AGCTGAGCCA CACCCTGAAA CACACCCAGA TCCGCATGGA CAGGGAGGTC AACCAGCTGA
1381AGCAGTGGGT CACCACAATG ATGATGTCCA TCACCAAGGA GGAGGACACA GCAGCTGAGC
1441TGGAGCTCAA AGCCCGAGTC TTCCACTTCG GCGAGTACAA GGGCGATCAG CAGGATAAGC
1501TGCTAGAGAG CCTGAACTGC AAGGTGCTGG ATGTGTACCG GCACTGCACC GGCACCCAGC
1561AGGAGGCCAA CCTGGGCACC GTGCAGATGC TGACCATCAT TGAGCACCAG CTGGATGAGC
1621TGCTAGAGAA CCTGGAGCAC GTGCCCCAGG TCAAGATCGA GCAGGCCGAG AGGGCAAAGG
1681AGAAGGAGCG GCGCATCAGA CTTCGAGAAG AGAAGCTCCA GATGCAAAAG ATCCTACAGG
1741AGGAGCATCT GCAGCGGGCC CGGGCGCGCG CCCAGGCTGA GATCAAGAAG AAGAGAGGCA
1801GGACACTGGT ATGCCGCTCA CGACCCCCAG CCCACAGGAT CAAACAACAG TCTGAGCACA
1861CACTGATGGA CAAGGAGGAG GAGGAGCTGC TATTTTTCTT TACTTTGCCA ACTTTCTTGT
1921ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)

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