Construct: ORF ccsbBroadEn_13649

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000841.1_s300c1, BRDN0000388668
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FAM209B (388799)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 388799 FAM209B family with sequence simila... NM_001013646.4 57.5% 46.7% (many diffs)
2 human 200232 FAM209A family with sequence simila... NM_001012971.3 56.2% 45.3% (many diffs)
3 human 388799 FAM209B family with sequence simila... XM_017027849.1 41.3% 34.1% (many diffs)
4 human 200232 FAM209A family with sequence simila... XR_001754199.1 30.3% (many diffs)
5 human 388799 FAM209B family with sequence simila... XR_001754273.1 13.1% (many diffs)
6 human 388799 FAM209B family with sequence simila... XR_001754272.1 12% (many diffs)
7 human 388799 FAM209B family with sequence simila... XR_001754271.1 9.7% (many diffs)
8 human 388799 FAM209B family with sequence simila... XR_001754270.1 7.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
384
ORF length:
318
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTG GACGCTGAAA TCGTCCCTGG TCCTGCTTCT GTGCCTCACC TGCAGCTATG
121CCTTTATGTT CTCTTCTCTG AGACAGAAAA CTAGCGAACC CCAGGGGAAG GTGCCGTGTG
181GAGAGCACTT TCGGATTCGG CAGAACCTAC CAGAGCACAC CCAAGGCTGG CTTGGGAGCA
241AATGGCTCTG GCTTTTGTTT GCTGTTGTGC CGTTTGTGAT ACTGAAGTGT CAAAGAGACA
301GTGAGAAGAA TAAGGTAAGG ATGGCTCCAT TTTTTTTACA CCATATTGAT TCAATCTCAG
361GAGTCTCAGG GAAACGGATG TTCTACCCAA CTTTCTTGTA CAAAGTtggc attataagaa
421agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)