Construct: ORF ccsbBroadEn_13664
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018372.1_s300c1, BRDN0000456800
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ANKRD20A11P (391267)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 391267 | ANKRD20A11P | ankyrin repeat domain 20 fa... | NR_027270.1 | 24.3% | (many diffs) | |
| 2 | human | 440482 | ANKRD20A5P | ankyrin repeat domain 20 fa... | NR_040113.1 | 7.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 375
- ORF length:
- 306
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAAGTTGTTC GGCTTCAGGA GCCACAGGGG CCAGACGGTC CTGGGCACCA 121 TAGACCACCT GTACACGGGT TCCGGGTACC GAATCCGGTA CTCGGAACTG CAGAAGATCC 181 ACAAGGCAGC TGTCAAGGGC GACGCCGCGG AGATGGAGCG CTGTCTGGCG CGCAGGAGCG 241 GAGACCTGGA CGCCCTGGAC AAGCAGCACA GAGTCTCACT TCTTTGCCCA GGCTGGTGTC 301 CAATGGCACA ATCTTGGCTC ACTGCAACCG CTGCCTCCCG GGTTCAAGCA ATTCTCCTCG 361 CTCAGCCTCC CAAGTTGCCA ACTTTCTTGT ACAAAGTTGG cattataaga aagcattgct 421 tatcaatttg ttgcaacgaa c