Construct: ORF ccsbBroadEn_13708
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002670.1_s300c1, BRDN0000390840
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LOC541473 (541473)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 100101148 | LOC100101148 | FKBP prolyl isomerase 6 pse... | NR_104007.1 | 34.6% | 1_132del;436_875del | |
| 2 | human | 8468 | FKBP6 | FKBP prolyl isomerase 6 | NM_001281304.2 | 30.3% | 27.5% | (many diffs) |
| 3 | human | 541473 | LOC541473 | FKBP prolyl isomerase 6 pse... | NR_003602.3 | 29.9% | 1_180del;355_444del;574_1013del | |
| 4 | human | 8468 | FKBP6 | FKBP prolyl isomerase 6 | XM_017012742.1 | 29.5% | 24.7% | (many diffs) |
| 5 | human | 8468 | FKBP6 | FKBP prolyl isomerase 6 | NM_001362789.2 | 27.9% | 25% | (many diffs) |
| 6 | human | 8468 | FKBP6 | FKBP prolyl isomerase 6 | NM_003602.5 | 27.5% | 25% | (many diffs) |
| 7 | human | 8468 | FKBP6 | FKBP prolyl isomerase 6 | XM_017012741.1 | 24.9% | 20.9% | (many diffs) |
| 8 | human | 8468 | FKBP6 | FKBP prolyl isomerase 6 | NM_001135211.3 | 24.5% | 20.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 369
- ORF length:
- 303
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG GGGAAGCGCG TTAAACCAGG GAGTCCTGGA AGGGGACGAC GCCCCCGGCC 121 AGTCCCTGTA CGAGCGGTTA AGTCAGAGGA TGCTGGACAT CTCGGGGGAC CGGGGCGTGC 181 TGAAGGACGT CATCCGAGAA GGAGCTGGAG ACCTAGTGGC GCCTGATGCT TCGGTGCTAG 241 ATATTACATT GTGGGGCATG GAGCTGGGCC TTCTGAGCAT GCAGAGAGGA GAGCTGGCCA 301 GATGCTTCGT CTTGGGTAAA CTCCTCGACT CCCAAGGCCC CAGCCTCCAT CTTTACCTCA 361 GAGCCTCCTG CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa 421 tttgttgcaa cgaac