Construct: ORF ccsbBroadEn_13730
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001951.1_s300c1, BRDN0000455240
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LRRC37A4P (55073)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 474170 | LRRC37A2 | leucine rich repeat contain... | XM_011524848.3 | 3.8% | 2.4% | (many diffs) |
| 2 | human | 474170 | LRRC37A2 | leucine rich repeat contain... | XM_011524846.3 | 3.8% | 2.4% | (many diffs) |
| 3 | human | 474170 | LRRC37A2 | leucine rich repeat contain... | XM_011524844.3 | 3.7% | 2.4% | (many diffs) |
| 4 | human | 474170 | LRRC37A2 | leucine rich repeat contain... | XM_011524843.3 | 3.7% | 2.4% | (many diffs) |
| 5 | human | 474170 | LRRC37A2 | leucine rich repeat contain... | XM_011524842.3 | 3.7% | 2.3% | (many diffs) |
| 6 | human | 474170 | LRRC37A2 | leucine rich repeat contain... | XM_011524841.3 | 3.6% | 2.3% | (many diffs) |
| 7 | human | 474170 | LRRC37A2 | leucine rich repeat contain... | NM_001006607.2 | 3.6% | 2.3% | (many diffs) |
| 8 | human | 9884 | LRRC37A | leucine rich repeat contain... | NM_014834.4 | 3.6% | 2.2% | (many diffs) |
| 9 | human | 387646 | LRRC37A6P | leucine rich repeat contain... | NR_003525.2 | 2.8% | (many diffs) | |
| 10 | human | 55073 | LRRC37A4P | leucine rich repeat contain... | NR_002940.2 | 2.6% | 1_4562del;4633_4730del;4856_7238del | |
| 11 | human | 55073 | LRRC37A4P | leucine rich repeat contain... | XR_002958879.1 | 2.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 264
- ORF length:
- 195
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAAGAAGGAT TCTCAAGGGG CATTTTCAGG TTTCTGCCAC GGAGGAGATG 121 CTCTTCACGA AGGGAGAGTC AGACGGCCGC TCTGGCTTAA AGATATGTAC AAACCTCTCA 181 GTGCCACAAG AGTAAATAAT CACGCATGGA AGCTGCACAA GAAGTCATCT AATGAGGACG 241 AGATCCTCAA CAGGGACCCT GGGTTGCCAA CTTTCTTGTA CAAAGTTGGc attataagaa 301 agcattgctt atcaatttgt tgcaacgaac