Transcript: Human NR_002940.2

Homo sapiens leucine rich repeat containing 37 member A4, pseudogene (LRRC37A4P), non-coding RNA.

Source:
NCBI, updated 2018-03-30
Taxon:
Homo sapiens (human)
Gene:
LRRC37A4P (55073)
Length:
7238
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_002940.2
NBCI Gene record:
LRRC37A4P (55073)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_002940.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000179998 CCAATGGAAGACTGAGAACTA pLKO.1 2591 3UTR 100% 4.950 2.475 Y LRRC37A3 n/a
2 TRCN0000145536 CGAAGGTCATTACAAGAAGAT pLKO.1 4544 3UTR 100% 4.950 2.475 Y LRRC37A n/a
3 TRCN0000138140 GATTGAGACCATCCTGGCTAA pLKO.1 6332 3UTR 100% 4.050 2.025 Y LOC441087 n/a
4 TRCN0000166201 CATGGTGAAACCCTGTCTCTA pLKO.1 6353 3UTR 100% 4.950 2.475 Y ORAI2 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_002940.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_13730 pDONR223 100% 2.6% None 1_4562del;4633_4730del;4856_7238del n/a
2 ccsbBroad304_13730 pLX_304 0% 2.6% V5 1_4562del;4633_4730del;4856_7238del n/a
3 TRCN0000476265 TCACAAGTTGTGGGCATTGCGCAC pLX_317 100% 2.6% V5 1_4562del;4633_4730del;4856_7238del n/a
Download CSV