Construct: ORF ccsbBroadEn_13744

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017887.1_s300c1, BRDN0000388088
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LSP1P3 (729862)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 729862 LSP1P3 LSP1 pseudogene 3 NR_033961.1 85.8% (many diffs)
2 human 4046 LSP1 lymphocyte specific protein 1 NM_001013253.2 20.7% 17.9% (many diffs)
3 human 4046 LSP1 lymphocyte specific protein 1 NM_001013254.1 20.7% 17.9% (many diffs)
4 human 4046 LSP1 lymphocyte specific protein 1 NM_001013255.1 20.7% 17.9% (many diffs)
5 human 4046 LSP1 lymphocyte specific protein 1 NM_001289005.1 20.7% 17.9% (many diffs)
6 human 4046 LSP1 lymphocyte specific protein 1 NM_002339.3 17.5% 15.1% (many diffs)
7 human 6801 STRN striatin XM_005264519.5 13.7% 10.7% (many diffs)
8 human 4046 LSP1 lymphocyte specific protein 1 NM_001242932.1 13.1% 11.3% (many diffs)
9 human 6801 STRN striatin NM_003162.4 13% 10.2% (many diffs)
10 human 6801 STRN striatin XM_011533073.2 12.6% 9.9% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
456
ORF length:
387
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGCCGTGGCC AGTACCAAGA GTCGGTGGGA GACGGGTGAG GTACAGGCTC
121AGTCTGCGGC CAAGACTCTG TCCTGCAAGG ATATTGTGGC TGGAGACATG AGCAACAAAA
181GCTTCTGGGA GCAGAAGGGA GGCTCCAAGA CCTCATCAAC AATTAAGGCC CAGATTGCCT
241TCCTACAGGG AGAAGGGAAG GGCCAAGAAA ATTTGAAGAA GGATCTTGTG AGGATGATCA
301AAATGTTGGA GTATGCTCTT AAACAGAAAA GAGCCAAATA CCACAAGTTG AAATATGGGA
361CAGAATTGAA TCAGGGAGCT ATGAAGCCTC CAAGCTATGA TTCTGATGAA GGTAATGAAA
421TAGAAGTGCA GCCACAACAA AACAGCCAGT TAATGTTGCC AACTTTCTTG TACAAAGTtg
481gcattataag aaagcattgc ttatcaattt gttgcaacga ac

Download FASTA (ORF) (Full)