Construct: ORF ccsbBroadEn_13809

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004748.1_s300c1, BRDN0000395903
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ADD1 (118)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 118 ADD1 adducin 1 NM_001354757.2 63.3% 62.1% 19G>T;1174_1315del;1343_1893del
2 human 118 ADD1 adducin 1 NM_001354758.1 63.3% 62.1% 19G>T;1174_1315del;1343_1893del
3 human 118 ADD1 adducin 1 NM_014190.4 63.3% 62.1% 19G>T;1174_1315del;1343_1893del
4 human 118 ADD1 adducin 1 XM_017007709.2 63.3% 62.1% 19G>T;1174_1315del;1343_1893del
5 human 118 ADD1 adducin 1 NM_001286645.1 60.3% 59.2% 19G>T;1174_1315del;1343_1986del
6 human 118 ADD1 adducin 1 NM_001354759.2 60.3% 59.2% 19G>T;1174_1315del;1343_1986del
7 human 118 ADD1 adducin 1 NM_176801.2 60.3% 59.2% 19G>T;1174_1315del;1343_1986del
8 human 118 ADD1 adducin 1 XM_024453887.1 60.3% 59.2% 19G>T;1174_1315del;1343_1986del
9 human 118 ADD1 adducin 1 NM_001354762.2 57.6% 56.5% 19G>T;1174_1315del;1343_2079del
10 human 118 ADD1 adducin 1 NM_001119.5 54.2% 53.1% 19G>T;1174_1315del;1343_2211del
11 human 118 ADD1 adducin 1 NM_001354754.2 54.2% 53.1% 19G>T;1174_1315del;1343_2211del
12 human 118 ADD1 adducin 1 NM_001354755.1 54.2% 53.1% 19G>T;1174_1315del;1343_2211del
13 human 118 ADD1 adducin 1 XM_017007706.2 54.2% 53.1% 19G>T;1174_1315del;1343_2211del
14 human 118 ADD1 adducin 1 NM_001354756.2 52% 51% 19G>T;1174_1315del;1343_2304del
15 human 118 ADD1 adducin 1 NM_014189.3 52% 51% 19G>T;1174_1315del;1343_2304del
16 human 118 ADD1 adducin 1 XM_017007704.1 52% 51% 19G>T;1174_1315del;1343_2304del
17 human 118 ADD1 adducin 1 XM_017007705.1 52% 51% 19G>T;1174_1315del;1343_2304del
18 human 118 ADD1 adducin 1 NM_001354761.2 50% 49% 19G>T;1174_1315del;1343_2397del
19 human 118 ADD1 adducin 1 XM_005247934.2 50% 49% 19G>T;1174_1315del;1343_2397del
20 human 118 ADD1 adducin 1 XM_017007703.1 50% 49% 19G>T;1174_1315del;1343_2397del
21 human 118 ADD1 adducin 1 XR_002959706.1 44.3% (many diffs)
22 human 118 ADD1 adducin 1 XR_002959707.1 31.4% (many diffs)
23 mouse 11518 Add1 adducin 1 (alpha) NM_001331081.1 56.7% 58.9% (many diffs)
24 mouse 11518 Add1 adducin 1 (alpha) XM_006503681.2 56.7% 58.9% (many diffs)
25 mouse 11518 Add1 adducin 1 (alpha) NM_001331087.1 56.6% 58.9% (many diffs)
26 mouse 11518 Add1 adducin 1 (alpha) NM_013457.4 56.6% 58.9% (many diffs)
27 mouse 11518 Add1 adducin 1 (alpha) XM_017320615.1 56.6% 58.9% (many diffs)
28 mouse 11518 Add1 adducin 1 (alpha) XM_006503680.2 54.2% 56.4% (many diffs)
29 mouse 11518 Add1 adducin 1 (alpha) NM_001331086.1 54.2% 56.3% (many diffs)
30 mouse 11518 Add1 adducin 1 (alpha) XM_006503678.3 54.1% 56.2% (many diffs)
31 mouse 11518 Add1 adducin 1 (alpha) XM_006503679.2 54.1% 56.2% (many diffs)
32 mouse 11518 Add1 adducin 1 (alpha) NM_001102444.2 54% 56.1% (many diffs)
33 mouse 11518 Add1 adducin 1 (alpha) XM_006503677.2 54% 56.1% (many diffs)
34 mouse 11518 Add1 adducin 1 (alpha) XM_006503675.3 51.8% 53.9% (many diffs)
35 mouse 11518 Add1 adducin 1 (alpha) XM_006503676.2 51.8% 53.9% (many diffs)
36 mouse 11518 Add1 adducin 1 (alpha) NM_001331085.1 51.7% 53.8% (many diffs)
37 mouse 11518 Add1 adducin 1 (alpha) XM_006503674.2 51.7% 53.8% (many diffs)
38 mouse 11518 Add1 adducin 1 (alpha) NM_001024458.4 48.7% 50.7% (many diffs)
39 mouse 11518 Add1 adducin 1 (alpha) NM_001331080.1 48.7% 50.7% (many diffs)
40 mouse 11518 Add1 adducin 1 (alpha) NM_001331084.1 46.9% 48.8% (many diffs)
41 mouse 11518 Add1 adducin 1 (alpha) NM_001331083.1 46.7% 48.7% (many diffs)
42 mouse 11518 Add1 adducin 1 (alpha) XM_006503670.3 45.9% 47.9% (many diffs)
43 mouse 11518 Add1 adducin 1 (alpha) NM_001331082.1 45% 46.9% (many diffs)
44 mouse 11518 Add1 adducin 1 (alpha) XM_006503669.3 45% 46.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1266
ORF length:
1200
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAA TGGTGATTCT CGTTCTGCGG TGGTGACCTC ACCACCCCCG ACCACAGCCC
121CTCACAAGGA GAGGTACTTC GACCGAGTAG ATGAGAACAA CCCAGAGTAC TTGAGGGAGA
181GGAACATGGC ACCAGACCTT CGCCAGGACT TCAACATGAT GGAGCAAAAG AAGAGGGTGT
241CCATGATTCT GCAAAGCCCT GCTTTCTGTG AAGAATTGGA ATCAATGATA CAGGAGCAAT
301TTAAGAAGGG GAAGAACCCC ACAGGCCTAT TGGCATTACA GCAGATTGCA GATTTTATGA
361CCACGAATGT ACCAAATGTC TACCCAGCAG CTCCGCAAGG AGGGATGGCT GCCTTAAACA
421TGAGTCTTGG TATGGTGACT CCTGTGAACG ATCTTAGAGG ATCTGATTCT ATTGCGTATG
481ACAAAGGAGA GAAGTTATTA CGGTGTAAAT TGGCAGCGTT TTATAGACTA GCAGATCTCT
541TTGGGTGGTC TCAGCTTATC TACAATCATA TCACAACCAG AGTGAACTCC GAGCAGGAAC
601ACTTCCTCAT TGTCCCTTTT GGGCTTCTTT ACAGTGAAGT GACTGCATCC AGTTTGGTTA
661AGATCAATCT ACAAGGAGAT ATAGTAGATC GTGGAAGCAC TAATCTGGGA GTGAATCAGG
721CCGGCTTCAC CTTACACTCT GCAATTTATG CTGCACGCCC GGACGTGAAG TGCGTCGTGC
781ACATTCACAC CCCAGCAGGG GCTGCGGTCT CTGCAATGAA ATGTGGCCTC TTGCCAATCT
841CCCCGGAGGC GCTTTCCCTT GGAGAAGTGG CTTATCATGA CTACCATGGC ATTCTGGTTG
901ATGAAGAGGA AAAAGTTTTG ATTCAGAAAA ATCTGGGGCC TAAAAGCAAG GTTCTTATTC
961TCCGGAACCA TGGGCTCGTG TCAGTTGGAG AGAGCGTTGA GGAGGCCTTC TATTACATCC
1021ATAACCTTGT GGTTGCCTGT GAGATCCAGG TTCGAACTCT GGCCAGTGCA GGAGGACCAG
1081ACAACTTAGT CCTGCTGAAT CCTGAGAAGT ACAAAGCCAA GTCCCGTTCC CCAGGGTCTC
1141CGGTAGGGGA AGGCACTGGA TCGCCTCCCA AGTGGCAGAT TGGTGAGCAG GAATTTGAAG
1201CCCTCATGCG GATGCTCGAT AATCTGGGCT ACAGAACTAG CAGCAGCGGG AGAAGACAAG
1261ATGGCTGCCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt
1321gttgcaacga ac

Download FASTA (ORF) (Full)