Construct: ORF ccsbBroadEn_13871

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004582.1_s300c1, BRDN0000392356
DNA Barcode:
None
Epitope Tag:
None
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
HNRNPC (3183)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3183 HNRNPC heterogeneous nuclear ribon... NM_001077443.1 99.7% 36.5% 315_316insG;876C>A
2 human 3183 HNRNPC heterogeneous nuclear ribon... NM_004500.3 99.7% 36.5% 315_316insG;876C>A
3 human 3183 HNRNPC heterogeneous nuclear ribon... XM_006720125.3 99.7% 36.5% 315_316insG;876C>A
4 human 3183 HNRNPC heterogeneous nuclear ribon... XM_011536712.2 99.7% 36.5% 315_316insG;876C>A
5 human 3183 HNRNPC heterogeneous nuclear ribon... XM_017021252.2 99.7% 36.5% 315_316insG;876C>A
6 human 3183 HNRNPC heterogeneous nuclear ribon... XM_017021253.2 99.7% 36.5% 315_316insG;876C>A
7 human 3183 HNRNPC heterogeneous nuclear ribon... XM_024449558.1 99.7% 36.5% 315_316insG;876C>A
8 human 3183 HNRNPC heterogeneous nuclear ribon... XM_024449559.1 99.7% 36.5% 315_316insG;876C>A
9 human 3183 HNRNPC heterogeneous nuclear ribon... NM_001077442.1 95.7% 34.6% 318_355del;915C>A
10 human 3183 HNRNPC heterogeneous nuclear ribon... NM_031314.2 95.7% 34.6% 318_355del;915C>A
11 human 3183 HNRNPC heterogeneous nuclear ribon... XM_011536708.1 95.7% 34.6% 318_355del;915C>A
12 human 3183 HNRNPC heterogeneous nuclear ribon... XM_011536709.3 95.7% 34.6% 318_355del;915C>A
13 human 3183 HNRNPC heterogeneous nuclear ribon... XM_011536710.2 95.7% 34.6% 318_355del;915C>A
14 human 3183 HNRNPC heterogeneous nuclear ribon... XM_011536711.2 95.7% 34.6% 318_355del;915C>A
15 human 3183 HNRNPC heterogeneous nuclear ribon... XM_024449556.1 95.7% 34.6% 318_355del;915C>A
16 human 3183 HNRNPC heterogeneous nuclear ribon... XM_024449557.1 95.7% 34.6% 318_355del;915C>A
17 human 343069 HNRNPCL1 heterogeneous nuclear ribon... NM_001013631.2 94.4% 33.4% (many diffs)
18 human 440563 HNRNPCL2 heterogeneous nuclear ribon... NM_001136561.3 93.2% 32.7% (many diffs)
19 human 649330 HNRNPCL3 heterogeneous nuclear ribon... NM_001146181.2 92.9% 33.4% (many diffs)
20 human 101060301 HNRNPCL4 heterogeneous nuclear ribon... NM_001302551.1 92.8% 33.4% (many diffs)
21 mouse 15381 Hnrnpc heterogeneous nuclear ribon... NM_001170983.1 92.5% 36.5% (many diffs)
22 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_006518578.2 92.5% 36.5% (many diffs)
23 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315857.1 92.5% 36.5% (many diffs)
24 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315858.1 92.5% 36.5% (many diffs)
25 mouse 15381 Hnrnpc heterogeneous nuclear ribon... NM_001170984.1 92.1% 36.6% (many diffs)
26 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_006518581.2 92.1% 36.6% (many diffs)
27 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315859.1 92.1% 36.6% (many diffs)
28 mouse 15381 Hnrnpc heterogeneous nuclear ribon... NM_001170981.1 90.3% 35.6% (many diffs)
29 mouse 15381 Hnrnpc heterogeneous nuclear ribon... NM_001170982.1 90.3% 35.6% (many diffs)
30 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315855.1 90.3% 35.6% (many diffs)
31 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315856.1 90.3% 35.6% (many diffs)
32 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_006518574.2 88.8% 34.6% (many diffs)
33 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315850.1 88.8% 34.6% (many diffs)
34 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315851.1 88.8% 34.6% (many diffs)
35 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_011244965.2 88.4% 34.7% (many diffs)
36 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315852.1 88.4% 34.7% (many diffs)
37 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315853.1 88.4% 34.7% (many diffs)
38 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315854.1 88.4% 34.7% (many diffs)
39 mouse 15381 Hnrnpc heterogeneous nuclear ribon... NM_016884.3 86.8% 33.8% (many diffs)
40 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_006518571.3 86.8% 33.8% (many diffs)
41 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_006518572.3 86.8% 33.8% (many diffs)
42 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315849.1 86.8% 33.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
393
ORF length:
327
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC CAGCAACGTT ACCAACAAGA CAGATCCTCG CTCCATGAAC TCCCGTGTAT
121TCATTGGGAA TCTCAACACT CTTGTGGTCA AGAAATCTGA TGTGGAGGCA ATCTTTTCGA
181AGTATGGCAA AATTGTGGGC TGCTCTGTTC ATAAGGGCTT TGCCTTCGTT CAGTATGTTA
241ATGAGAGAAA TGCCCGGGCT GCTGTAGCAG GAGAGGATGG CAGAATGATT GCTGGCCAGG
301TTTTAGATAT TAACCTGGCT GCAGAGCCAA AAGTGAACCG AGGAAAAGCA GGTGTGAAAC
361GATCTGCAGC GGAGATGTAC GGGCTCCTCT TTTGACTTGG ACTATGACTT TCAACGGGAC
421TATTATGATA GGATGTACAG TTACCCAGCA CGTGTACCTC CTCCTCCTCC TATTGCTCGG
481GCTGTAGTGC CCTCGAAACG TCAGCGTGTA TCAGGAAACA CTTCACGAAG GGGCAAAAGT
541GGCTTCAATT CTAAGAGTGG ACAGCGGGGA TCTTCCAAGT CTGGAAAGTT GAAAGGAGAT
601GACCTTCAGG CCATTAAGAA GGAGCTGACC CAGATAAAAC AAAAAGTGGA TTCTCTCCTG
661GAAAACCTGG AAAAAATTGA AAAGGAACAG AGCAAACAAG CAGTAGAGAT GAAGAATGAT
721AAGTCAGAAG AGGAGCAGAG CAGCAGCTCC GTGAAGAAAG ATGAGACTAA TGTGAAGATG
781GAGTCTGAGG GGGGTGCAGA TGACTCTGCT GAGGAGGGGG ACCTACTGGA TGATGATGAT
841AATGAAGATC GGGGGGATGA CCAGCTGGAG TTGATCAAGG ATGATGAAAA AGAGGCTGAG
901GAAGGAGAGG ATGACAGAGA CAGCGCCAAT GGCGAGGATG AATCTTACCC AACTTTCTTG
961TACAAAGTtg gcattataag aaagcattgc ttatcaattt gttgcaacga ac

Download FASTA (ORF) (Full)