Construct: ORF ccsbBroadEn_13893

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000716.1_s300c1, BRDN0000396675
DNA Barcode:
None
Epitope Tag:
None
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
LTA4H (4048)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4048 LTA4H leukotriene A4 hydrolase NM_000895.3 99.9% 1.9% 12delA
2 human 4048 LTA4H leukotriene A4 hydrolase NM_001256643.1 93.5% 2% (many diffs)
3 human 4048 LTA4H leukotriene A4 hydrolase XM_005268871.2 87% 2.2% 12delA;1529_1530ins83;1596_1597ins154
4 human 4048 LTA4H leukotriene A4 hydrolase XR_001748703.2 82.1% (many diffs)
5 human 4048 LTA4H leukotriene A4 hydrolase NM_001256644.1 80.7% 2.3% (many diffs)
6 human 4048 LTA4H leukotriene A4 hydrolase NR_132659.1 77.8% (many diffs)
7 human 4048 LTA4H leukotriene A4 hydrolase XM_011538349.3 76.8% 2.5% (many diffs)
8 human 4048 LTA4H leukotriene A4 hydrolase XR_002957326.1 62.5% (many diffs)
9 mouse 16993 Lta4h leukotriene A4 hydrolase NM_008517.2 87.2% 1.9% (many diffs)
10 mouse 16993 Lta4h leukotriene A4 hydrolase NM_001313897.1 75.7% 2.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
168
ORF length:
102
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCC CGAGATGTGG ATACCTGTTC GTTGGCCTCT CCGGCTTCCG TCTGCCGGAC
121CAAGCACCTG CACCTGCGCT GCAGCGTCGA CTTTACTCGC CGGACGCTGA CCGGGACTGC
181TGCTCTCACG GTCCAGTCTC AGGAGGACAA TCTGCGCAGC CTGGTTTTGG ATACAAAGGA
241CCTTACAATA GAAAAAGTAG TGATCAATGG ACAAGAAGTC AAATATGCTC TTGGAGAAAG
301ACAAAGTTAC AAGGGATCGC CAATGGAAAT CTCTCTTCCT ATCGCTTTGA GCAAAAATCA
361AGAAATTGTT ATAGAAATTT CTTTTGAGAC CTCTCCAAAA TCTTCTGCTC TCCAGTGGCT
421CACTCCTGAA CAGACTTCTG GGAAGGAACA CCCATATCTC TTTAGTCAGT GCCAGGCCAT
481CCACTGCAGA GCAATCCTTC CTTGTCAGGA CACTCCTTCT GTGAAATTAA CCTATACTGC
541AGAGGTGTCT GTCCCTAAAG AACTGGTGGC ACTTATGAGT GCTATTCGTG ATGGAGAAAC
601ACCTGACCCA GAAGACCCAA GCAGGAAAAT ATACAAATTC ATCCAAAAAG TTCCAATACC
661CTGCTACCTG ATTGCTTTAG TTGTTGGAGC TTTAGAAAGC AGGCAAATTG GCCCAAGAAC
721TTTGGTGTGG TCTGAGAAAG AGCAGGTGGA AAAGTCTGCT TATGAGTTTT CTGAGACTGA
781ATCTATGCTT AAAATAGCAG AAGATCTGGG AGGACCGTAT GTATGGGGAC AGTATGACCT
841ATTGGTCCTG CCACCATCCT TCCCTTATGG TGGCATGGAG AATCCTTGCC TTACTTTTGT
901AACTCCTACT CTACTGGCAG GCGACAAGTC ACTCTCCAAT GTCATTGCAC ATGAAATATC
961TCATAGCTGG ACAGGGAATC TAGTGACCAA CAAAACTTGG GATCACTTTT GGTTAAATGA
1021GGGACATACT GTGTACTTGG AACGCCACAT TTGCGGACGA TTGTTTGGTG AAAAGTTCAG
1081ACATTTTAAT GCTCTGGGAG GATGGGGAGA ACTACAGAAT TCGGTAAAGA CATTTGGGGA
1141GACACATCCT TTCACCAAAC TTGTGGTTGA TCTGACAGAT ATAGACCCTG ATGTAGCTTA
1201TTCTTCAGTT CCCTATGAGA AGGGCTTTGC TTTACTTTTT TACCTTGAAC AACTGCTTGG
1261AGGACCAGAG ATTTTCCTAG GATTCTTAAA AGCTTATGTT GAGAAGTTTT CCTATAAGAG
1321CATAACTACT GATGACTGGA AGGATTTCCT GTATTCCTAT TTTAAAGATA AGGTTGATGT
1381TCTCAATCAA GTTGATTGGA ATGCCTGGCT CTACTCTCCT GGACTGCCTC CCATAAAGCC
1441CAATTATGAT ATGACTCTGA CAAATGCTTG TATTGCCTTA AGTCAAAGAT GGATTACTGC
1501CAAAGAAGAT GATTTAAATT CATTCAATGC CACAGACCTG AAGGATCTCT CTTCTCATCA
1561ATTGAATGAG TTTTTAGCAC AGACGCTCCA GAGGGCACCT CTTCCATTGG GGCACATAAA
1621GCGAATGCAA GAGGTGTACA ACTTCAATGC CATTAACAAT TCTGAAATAC GATTCAGATG
1681GCTGCGGCTC TGCATTCAAT CCAAGTGGGA GGACGCAATT CCTTTGGCGC TAAAGATGGC
1741AACTGAACAA GGAAGAATGA AGTTTACCCG GCCCTTATTC AAGGATCTTG CTGCCTTTGA
1801CAAATCCCAT GATCAAGCTG TCCGAACCTA CCAAGAGCAC AAAGCAAGCA TGCATCCCGT
1861GACTGCAATG CTGGTGGGGA AAGACTTAAA AGTGGATAAC CCAACTTTCT TGTACAAAGT
1921tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)

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