Construct: ORF ccsbBroadEn_13894

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009857.1_s300c1, BRDN0000457472
DNA Barcode:
None
Epitope Tag:
None
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
LTBP1 (4052)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4052 LTBP1 latent transforming growth ... NM_000627.3 99.9% 46.6% 1949_1950insG;3787G>T
2 human 4052 LTBP1 latent transforming growth ... NM_001166264.1 96.9% 48.1% 1949_1950insG;2751_2752ins126;3661G>T
3 human 4052 LTBP1 latent transforming growth ... NM_001166265.1 96.1% 42.8% 1186_1187ins159;1790_1791insG;3628G>T
4 human 4052 LTBP1 latent transforming growth ... XM_024452890.1 93.9% 45% (many diffs)
5 human 4052 LTBP1 latent transforming growth ... NM_001166266.1 93.1% 44.1% (many diffs)
6 human 4052 LTBP1 latent transforming growth ... XM_024452888.1 90.7% 41.2% (many diffs)
7 human 4052 LTBP1 latent transforming growth ... XM_024452889.1 90.7% 41.2% (many diffs)
8 human 4052 LTBP1 latent transforming growth ... XM_011532860.2 82.2% 35.1% (many diffs)
9 human 4052 LTBP1 latent transforming growth ... NM_206943.3 80.3% 36.6% (many diffs)
10 human 4052 LTBP1 latent transforming growth ... XM_011532853.2 80.3% 36.5% (many diffs)
11 human 4052 LTBP1 latent transforming growth ... XM_011532855.2 80.3% 36.5% (many diffs)
12 human 4052 LTBP1 latent transforming growth ... XM_017004108.1 78% 37.4% (many diffs)
13 human 4052 LTBP1 latent transforming growth ... XM_011532856.2 77.9% 37.3% (many diffs)
14 human 4052 LTBP1 latent transforming growth ... XM_017004109.1 77.9% 37.5% (many diffs)
15 human 4052 LTBP1 latent transforming growth ... XM_011532857.2 77.8% 37.4% (many diffs)
16 human 4052 LTBP1 latent transforming growth ... XM_011532858.2 77.8% 34.1% (many diffs)
17 human 4052 LTBP1 latent transforming growth ... XM_005264317.3 77.2% 33.5% (many diffs)
18 human 4052 LTBP1 latent transforming growth ... XM_011532859.2 77.2% 33.4% (many diffs)
19 human 4052 LTBP1 latent transforming growth ... XM_017004110.1 75.6% 38.4% (many diffs)
20 human 4052 LTBP1 latent transforming growth ... XM_011532861.2 75.1% 38.5% (many diffs)
21 human 4052 LTBP1 latent transforming growth ... XM_005264318.3 74.8% 34.3% (many diffs)
22 human 4052 LTBP1 latent transforming growth ... XM_011532862.2 52.8% 50.3% (many diffs)
23 mouse 268977 Ltbp1 latent transforming growth ... NM_206958.3 87.8% 43.2% (many diffs)
24 mouse 268977 Ltbp1 latent transforming growth ... NM_001331233.1 87.7% 43.2% (many diffs)
25 mouse 268977 Ltbp1 latent transforming growth ... XM_006524353.2 87% 42.3% (many diffs)
26 mouse 268977 Ltbp1 latent transforming growth ... NM_001331234.1 85% 44.6% (many diffs)
27 mouse 268977 Ltbp1 latent transforming growth ... NM_001331237.1 84.1% 39.8% (many diffs)
28 mouse 268977 Ltbp1 latent transforming growth ... NM_001331235.1 84% 39.8% (many diffs)
29 mouse 268977 Ltbp1 latent transforming growth ... NM_001331236.1 81.3% 41% (many diffs)
30 mouse 268977 Ltbp1 latent transforming growth ... XM_006524351.2 72.5% 32.2% (many diffs)
31 mouse 268977 Ltbp1 latent transforming growth ... NM_019919.4 71% 34.5% (many diffs)
32 mouse 268977 Ltbp1 latent transforming growth ... XM_006524348.3 70.9% 34.5% (many diffs)
33 mouse 268977 Ltbp1 latent transforming growth ... XM_006524349.3 68.7% 35.4% (many diffs)
34 mouse 268977 Ltbp1 latent transforming growth ... XM_006524350.3 68% 31.7% (many diffs)
35 mouse 268977 Ltbp1 latent transforming growth ... XM_017317492.1 67.9% 31.7% (many diffs)
36 mouse 268977 Ltbp1 latent transforming growth ... XM_017317493.1 65.7% 32.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2034
ORF length:
1965
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGATACTAAG CTGATGTGTT TGTTGTTCTT TTTCTCCCTG CCTCCGCTCC
121TAGTGAGTAA CCACACTGGC CGCATCAAGG TGGTCTTTAC TCCGAGCATC TGTAAAGTGA
181CCTGCACCAA GGGCAGCTGT CAGAACAGCT GTGAGAAGGG GAACACCACC ACTCTCATTA
241GTGAGAATGG TCATGCTGCC GACACCCTGA CGGCCACGAA CTTCCGAGTG GTAATTTGCC
301ATCTTCCATG TATGAATGGT GGCCAGTGCA GTTCAAGGGA CAAATGTCAG TGCCCTCCAA
361ATTTCACAGG AAAACTTTGT CAGATCCCAG TCCATGGTGC CAGCGTGCCT AAACTTTATC
421AGCATTCCCA GCAGCCAGGC AAGGCGTTGG GGACGCATGT CATCCATTCA ACACATACCT
481TGCCTCTGAC CGTGACTAGC CAGCAAGGAG TCAAAGTGAA ATTTCCTCCT AACATAGTCA
541ATATCCATGT GAAACATCCT CCTGAAGCTT CCGTCCAGAT ACATCAGGTT TCAAGAATTG
601ATGGCCCAAC AGGCCAGAAG ACAAAAGAAG CTCAACCAGG CCAATCCCAA GTCTCGTACC
661AAGGGCTTCC TGTCCAGAAG ACCCAGACCA TACATTCCAC ATACTCCCAC CAGCAGGTCA
721TTCCTCACGT CTACCCCGTG GCTGCTAAGA CACAGCTTGG CCGGTGCTTC CAGGAAACCA
781TTGGGTCACA GTGTGGCAAA GCGCTCCCTG GCCTTTCAAA GCAAGAGGAC TGCTGTGGAA
841CTGTGGGTAC CTCCTGGGGC TTTAACAAAT GCCAGAAATG CCCCAAGAAA CCATCTTATC
901ATGGATACAA CCAAATGATG GAATGCCTAC CGGGTTATAA GCGGGTTAAC AACACCTTTT
961GCCAAGATAT TAATGAATGT CAGCTACAAG GTGTATGCCC TAATGGTGAG TGTTTGAATA
1021CCATGGGCAG CTATCGATGT ACCTGCAAAA TAGGATTTGG GCCGGATCCT ACCTTTTCAA
1081GTTGTGTTCC TGATCCCCCT GTGATCTCGG AAGAGAAAGG GCCCTGTTAC CGACTTGTCA
1141GTTCTGGAAG ACAGTGTATG CACCCTCTGT CTGTTCACCT CACCAAGCAG CTCTGCTGTT
1201GTAGTGTGGG CAAGGCCTGG GGCCCACACT GTGAGAAATG TCCCCTTCCA GGCACAGCTG
1261CTTTTAAGGA AATCTGTCCT GGTGGAATGG GTTATACGGT TTCTGGCGTT CATAGACGCA
1321GGCCAATCCA TCACCATGTA GGTAAAGGAC CTGTATTTGT CAAGCCAAAG AACACTCAAC
1381CTGTTGCTAA AAGTACTCAT CCTCCACCTC TCCCAGCCAA GGAAGAGCCA GTGGAGGCCC
1441TGACCTTCTC CCGGGAACAC GGGCCAGGAG TGGCGGAGCC AGAAGTGGCA ACTGCACCCC
1501CTGAAAAGGA AATACCTTCA TTGGATCAAG AGAAAACCAA ACTTGAGCCT GGTCAACCCC
1561AGCTGTCTCC AGGCATTTCC ACTATTCATC TGCATCCACA GTTTCCAGTA GTGATTGAAA
1621AAACATCACC TCCTGTGCCT GTTGAAGTAG CTCCTGAAGC TTCTACGTCT AGTGCCAGCC
1681AAGTGATTGC TCCTACTCAA GTGACAGAAA TCAATGAATG TACTGTGAAC CCTGATATCT
1741GTGGAGCAGG ACACTGCATT AACCTACCAG TGAGATATAC CTGTATATGC TACGAGGGCT
1801ACAGGTTCAG TGAACAACAG AGGAAATGTG TGGATATTGA TGAGTGTACT CAGGTCCAAC
1861ACCTCTGCTC CCAGGGCCGC TGTGAAAACA CCGAGGGAAG TTTCTTGTGC ATTTGCCCAG
1921CAGGATTTAT GGCCAGTGAG GAGGGTACTA ACTGCATAGA TGTTGACGAA TGCCTGAGGC
1981CGGACGTCTG TGGGGAGGGG CACTGTGTCA ATACTGTGGG GGGCCTTCCG GTGTGAATAC
2041TGTGACAGCG GGTACCGCAT GACTCAGAGA GGCCGTTGTG AGGATATTGA TGAATGTTTG
2101AATCCAAGCA CTTGTCCAGA TGAGCAGTGT GTGAATTCTC CTGGATCTTA CCAGTGCGTT
2161CCCTGCACAG AAGGATTCCG AGGCTGGAAT GGACAGTGCC TTGATGTGGA CGAGTGCCTG
2221GAACCAAACG TCTGCGCAAA TGGTGATTGT TCCAACCTTG AAGGCTCCTA CATGTGTTCA
2281TGCCACAAAG GCTATACCCG GACTCCGGAC CACAAGCACT GTAGAGATAT TGATGAATGT
2341CAGCAAGGGA ATCTATGTGT AAACGGGCAG TGCAAAAATA CCGAGGGCTC CTTCAGGTGC
2401ACCTGTGGAC AGGGGTACCA GCTGTCGGCA GCTAAAGACC AGTGTGAAGA CATTGATGAA
2461TGCCAGCACC GTCATCTCTG TGCTCATGGG CAGTGCAGGA ACACTGAGGG CTCTTTTCAA
2521TGTGTGTGTG ACCAGGGTTA CAGAGCATCT GGGCTTGGAG ACCACTGTGA AGATATCAAT
2581GAATGCTTGG AGGACAAGAG TGTTTGCCAG AGAGGAGACT GCATTAATAC TGCAGGGTCC
2641TATGATTGTA CTTGTCCGGA TGGATTTCAG CTAGATGACA ATAAAACATG TCAAGATATT
2701AATGAATGTG AACATCCAGG GCTCTGTGGT CCGCAAGGGG AGTGCCTAAA CACAGAGGGT
2761TCTTTCCATT GTGTCTGCCA GCAGGGTTTC TCAATCTCTG CAGATGGCCG TACGTGTGAA
2821GATATTGATG AATGTGTAAA CAACACTGTT TGTGACAGTC ACGGGTTTTG TGACAATACA
2881GCTGGCTCCT TCCGCTGCCT CTGTTATCAG GGCTTTCAAG CCCCACAGGA TGGGCAAGGG
2941TGTGTGGATG TGAATGAATG TGAACTGCTC AGTGGGGTGT GTGGTGAAGC CTTCTGTGAA
3001AACGTGGAAG GGTCCTTCCT GTGCGTGTGT GCTGATGAAA ACCAAGAGTA CAGCCCCATG
3061ACTGGGCAGT GCCGCTCCCG GACCTCCACA GATTTAGATG TAGATGTAGA TCAACCCAAA
3121GAAGAAAAGA AAGAATGCTA CTATAATCTC AATGACGCCA GTCTCTGTGA TAATGTGTTG
3181GCCCCCAATG TCACGAAACA AGAATGCTGC TGTACATCAG GCGCGGGATG GGGAGATAAC
3241TGCGAAATCT TCCCCTGCCC GGTCTTGGGA ACTGCTGAGT TCACTGAAAT GTGTCCCAAA
3301GGGAAAGGTT TTGTGCCTGC TGGAGAATCA TCTTCTGAAG CTGGTGGTGA GAACTATAAA
3361GATGCAGATG AATGCCTACT TTTTGGACAA GAAATCTGCA AAAATGGTTT CTGTTTGAAC
3421ACTCGGCCTG GGTATGAATG CTACTGTAAG CAAGGGACGT ACTATGATCC TGTGAAACTG
3481CAGTGCTTTG ATATGGATGA ATGTCAAGAC CCCAGTAGTT GTATTGATGG CCAGTGTGTT
3541AATACAGAGG GCTCTTACAA CTGCTTCTGT ACTCACCCCA TGGTCCTGGA TGCGTCAGAA
3601AAAAGATGTA TACGACCGGC TGAGTCAAAC GAACAAATAG AAGAAACTGA TGTCTACCAA
3661GATTTGTGCT GGGAACATCT GAGTGATGAA TACGTGTGTA GCCGGCCTCT TGTGGGCAAG
3721CAGACAACGT ACACTGAGTG CTGCTGTCTG TATGGAGAGG CCTGGGGCAT GCAGTGTGCC
3781CTCTGCCCCC TGAAGGATTC AGATGACTAT GCTCAGCTGT GTAACATCCC CGTGACGGGA
3841CGCCGGCAGC CATATTGACG GGACGCCTTG GTTGACTTCA GTGAACAGTA TACTCCAGAA
3901GCCGATCCCT ACTTCATCCA AGACCGTTTT CTAAATAGCT TTGAGGAGTT ACAGGCTGAG
3961GAATGCGGCA TCCTCAATGG ATGTGAAAAT GGTCGCTGTG TGAGGGTCCA GGAAGGTTAC
4021ACCTGCGATT GCTTTGATGG GTATCACTTG GATACGGCCA AGATGACCTG TGTCGATGTA
4081AATGAATGCG ATGAGTTGAA CAACCGGATG TCTCTCTGCA AGAATGCCAA GTGCATTAAC
4141ACCGATGGTT CCTACAAGTG TTTGTGTCTG CCAGGCTACG TGCCTTCTGA CAAGCCAAAC
4201TACTGCACTC CGTTGAATAC CGCCTTGAAT TTAGAGAAAG ACAGTGACCT GGAGTTGCCA
4261ACTTTCTTGT ACAAAGTTGG cattataaga aagcattgct tatcaatttg ttgcaacgaa
4321c

Download FASTA (ORF) (Full)